View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_low_47 (Length: 215)
Name: NF6487_low_47
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 38383516 - 38383334
Alignment:
| Q |
13 |
aagaatatattttgtttctaatttcatttcttccataggtaacttcttcacataaatcaagaagttaattaaggtaggacatagcaaatgttttgtaaag |
112 |
Q |
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| T |
38383516 |
aagaatatattttgtttctaatttcatttcttccataggtaacttcttcacataaatcaagaagttaattaag--aggacatagcaaatgttttgtgaag |
38383419 |
T |
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| Q |
113 |
agtattttagatagctgaaattaaacacaatactcatttcatttgtaggctgggttgattctaggtgtctcatttgagctaaaac |
197 |
Q |
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| T |
38383418 |
agtattttagatagctgaaattaaacacaatactcatttcatttgtaggctgggttgattctaggtgtctcgtttgagctaaaac |
38383334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 38392259 - 38392192
Alignment:
| Q |
130 |
aaattaaacacaatactcatttcatttgtaggctgggttgattctaggtgtctcatttgagctaaaac |
197 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38392259 |
aaattaaacacaatactcattccatttgcaggctgggttgattctaggtgtctcatttgagctaaaac |
38392192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 38400846 - 38400782
Alignment:
| Q |
132 |
attaaacacaatactcatttcatttgtaggctgggttgattctaggtgtctcatttgagctaaaa |
196 |
Q |
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| T |
38400846 |
attaaacacaatactcattccatttgcaggttgggttgattctaggtgtttcatttgagctaaaa |
38400782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 38400952 - 38400883
Alignment:
| Q |
11 |
cgaagaatatattttgtttctaatttcatttcttccataggtaacttcttcacataaatcaagaagttaa |
80 |
Q |
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| T |
38400952 |
cgaagaatagattttgtttctaatttcatttcttacatctgtaacttcttcacacaaatgatgaagttaa |
38400883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 38392371 - 38392339
Alignment:
| Q |
16 |
aatatattttgtttctaatttcatttcttccat |
48 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
38392371 |
aatagattttgtttctaatttcatttcttccat |
38392339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 37839237 - 37839303
Alignment:
| Q |
131 |
aattaaacacaatactcatttcatttgtaggctgggttgattctaggtgtctcatttgagctaaaac |
197 |
Q |
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||||||||||| || ||||| |||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
37839237 |
aattaaacacattattcattccatttgcaggctgggttgattctaggtatctcatttgagctaaaac |
37839303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 37838892 - 37838924
Alignment:
| Q |
16 |
aatatattttgtttctaatttcatttcttccat |
48 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
37838892 |
aatagattttgtttctaatttcatttcttccat |
37838924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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