View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_low_6 (Length: 539)
Name: NF6487_low_6
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 27836687 - 27837208
Alignment:
| Q |
1 |
ttgaaatttaaaaacctttgtttcatcaaaccaaataaatttaggtagccatcaatttcagtcatattccctacatcaagacttttattttcattaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27836687 |
ttgaaatttaaaaacctttgtttcatcaaaccaaataaatttaggtagccatcaatttcagtcatattccctacatcaagacctttattttcattaccaa |
27836786 |
T |
|
| Q |
101 |
gatcctctggctgtttctccctacagttaaagaagacaaatcatataattgtgatcaaatgttagttataaataggttaatagtgttttaccccttataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||| ||| |
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| T |
27836787 |
tatcctctggctgtttctccctacagttaaagaagacaaatcatataattgtgatcaaatattagttataaataggttaatagtgctttatcacttgtaa |
27836886 |
T |
|
| Q |
201 |
aatannnnnnnnaagtagcaaacaaatgcatgaaacttttctaagtgaagatataatttggattgatgtcataccatataccaataccatatgcaacttg |
300 |
Q |
| |
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|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27836887 |
aatattttttttaaatagcaaacaaatgcatgaaacttttc-aagtgaagatataatttggattgatgtcataccatataccaataccatatgcaacttg |
27836985 |
T |
|
| Q |
301 |
caaaatttactatattatttgccttaaagcaaataagtcatttacattgttaatttannnnnnnnaggaaaattttgatttgcctcctctaaagtaaatc |
400 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27836986 |
caaaatttactatattatttaccttaaagcaaataagtcatttacactgttaatttattttttttaggaaaattttgatttgcctcctctaaagtaaatc |
27837085 |
T |
|
| Q |
401 |
gagtaaagtgaaaaaaccaaatataaataatgtttcattatactaacgatttgttatgcatgtgcatataatatcaactacgaatccatttatcaatagt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27837086 |
gagtaaagtgaaaaaaccaaatataaataatgtttcattatactaacgatttgttatgcatgtgcatataatatcaactacgaatccatttatcaatagt |
27837185 |
T |
|
| Q |
501 |
taagagagaagtgttatggacac |
523 |
Q |
| |
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|||||||||||||||||| |||| |
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|
| T |
27837186 |
taagagagaagtgttatgaacac |
27837208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 446 - 480
Target Start/End: Original strand, 35257331 - 35257365
Alignment:
| Q |
446 |
acgatttgttatgcatgtgcatataatatcaacta |
480 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
35257331 |
acgatttgttatgcatgtgcatataatatcaacta |
35257365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 478
Target Start/End: Original strand, 42731654 - 42731683
Alignment:
| Q |
449 |
atttgttatgcatgtgcatataatatcaac |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
42731654 |
atttgttatgcatgtgcatataatatcaac |
42731683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 478
Target Start/End: Original strand, 1550450 - 1550480
Alignment:
| Q |
448 |
gatttgttatgcatgtgcatataatatcaac |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
1550450 |
gatttgttatgcatgtgcatataatatcaac |
1550480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 480
Target Start/End: Complemental strand, 15252232 - 15252198
Alignment:
| Q |
446 |
acgatttgttatgcatgtgcatataatatcaacta |
480 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |
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|
| T |
15252232 |
acgatttgttatgcatgtccatataatatcaacta |
15252198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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