View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_low_8 (Length: 502)
Name: NF6487_low_8
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 502
Target Start/End: Original strand, 9927737 - 9928210
Alignment:
| Q |
17 |
tgataaattcaccaaactctatatggccgctgtgattgacatcgaagagatcaaacatctgcatgtaaagaagatcaaacgactatacttgaaaagctct |
116 |
Q |
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| T |
9927737 |
tgataaattcaccaaactctatatggccgttgtgattgacatcgaagagatcaaacatctgcatgtaaagaagatcaaacaactatacttgaaaagctct |
9927836 |
T |
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| Q |
117 |
ttacattatcaacatgtgtaagaacaacaataattagatcaacataccctatcgacaaagaggttgcgtttgtttctgtttctaaaaagagcaaagtgaa |
216 |
Q |
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| T |
9927837 |
ttacat---------gtgtacgaacaacaataattagatcaacataccctatcgacaaagaggttgcgtttgtttctgtttctaaaaagagcaaagtgaa |
9927927 |
T |
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| Q |
217 |
gctcttcctgttaatatacacattacaaaaatcaatcgcaagaaatgcatctaaacaagtacaaaaatattgaatataaaaaattaccttttgaataagt |
316 |
Q |
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| T |
9927928 |
gctcttcctgtta---tacacattacaaaaatcaatcgcaagaaatgcatctaaacaagtacaaaaatattgaatttaaaaaattaccttttgaataagt |
9928024 |
T |
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| Q |
317 |
ccatttttcacaataactgcgcttaattttttgtacaactccttcaagatttccacctctcttacggtaactgctaggtacaagaaaagatcttcaaaac |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9928025 |
ccatttttcacaataactgcgcttaattttttgtacaactccttcaagatttccacctctcttactgtaactgctaggtacaagaaaagatcttcaaaac |
9928124 |
T |
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| Q |
417 |
aatgtacactattcatatacaattggttgcaaaaatgaaaggaaccatgtttgtagcagcaaataagtgtttatgtataagttatt |
502 |
Q |
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| T |
9928125 |
aatgtacactattcatatacaattggttgcaaaaatgaaaggaaccatgtttgtagcagcaaataagtgtttatgtataagttatt |
9928210 |
T |
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