View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6488_high_1 (Length: 631)
Name: NF6488_high_1
Description: NF6488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6488_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 163 - 613
Target Start/End: Complemental strand, 27681826 - 27681378
Alignment:
| Q |
163 |
gcaactcatggaagaagacactttgatatatatggtgcataccatcttgccattatggaatgcagatgtcatgaaggacattttcttcaagattgatggc |
262 |
Q |
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| T |
27681826 |
gcaactcatggaagaagacactttgatatatatggtgcataccatcttgccattatggaatgcagatgtcatgaaggacattttcttcaagattgatggc |
27681727 |
T |
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| Q |
263 |
acacctgatactggtgcaacacaacaaatggtgcacaatattatggagtatatggaaaagtagcaactttcagctgtgggaaaatatggaggagaatcct |
362 |
Q |
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| T |
27681726 |
acaccttatactggtgcaacacaacaaatggtgcacaatattatggagtatatggaaaagtagcaactttcagttgtgggaaaatatggaggagaatcct |
27681627 |
T |
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| Q |
363 |
gcaaatgttattcattctaagctaattgaaggaagcaaatcgaagggaggtaattgtgcagaaacgcgatgatcggtagtacaaaccacctcataggaaa |
462 |
Q |
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| T |
27681626 |
gcaaatgttattcattctaagctaattgaaggaagcaaatcgaagggaggtaattgtgcagaaacgcgatgatcggtagcacaaaccacctcataggaaa |
27681527 |
T |
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| Q |
463 |
ctgaagtgtattgttataatgcttcattttccagtgaaggtgtatgcgtcatctttatcatggcaaaagttgctaaattcaagtcacaacttcatgttgc |
562 |
Q |
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| T |
27681526 |
ctgaagtgtattgt--taatgcttcattttccagtgaaggtgtatgcgtcatctttatcgtggcaaaagttgctaaattcaagtcacaacttcatgttgc |
27681429 |
T |
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| Q |
563 |
tgaaggtgaggtatatgatttgctacaatctactttggattcaagaactag |
613 |
Q |
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| T |
27681428 |
tgaaggtgaggtatatgatttgctacaatctactttggattcaagaactag |
27681378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 27681975 - 27681881
Alignment:
| Q |
10 |
aagaatattatgtgaagctaagtcactccgtgctttatattaaagatatgtgtcttcttttacaactcatggaatattaatttaggtcaaatacc |
104 |
Q |
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| T |
27681975 |
aagaaaattatgtgaagctaagttactccgtgctttatattaaagatatgtgtcttcttttacaactcatgaaatattaatttaggtcaaatacc |
27681881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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