View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6488_high_3 (Length: 596)
Name: NF6488_high_3
Description: NF6488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6488_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Original strand, 42910803 - 42911380
Alignment:
| Q |
1 |
agaaaatattatgtggtctatagatttataatgagctgtccaagtcttcaacaattttccactagtcacctacaattcatcattaacaacacaatttcac |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42910803 |
agaaaatattatgtggtctacagatttataatgagctgtccaagtcttcaacaattttccactagtcacctacaattcatcataaacaacacaatttcac |
42910902 |
T |
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| Q |
101 |
aaacaaaataatctaaatatagcattaaaccttacatgtaagggagtcttaggatcaaatttttgatcaaacattcacccattttaagtcatattcaata |
200 |
Q |
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| T |
42910903 |
aaacaaaataatccaaatatagcattaaaccttacatgtaagggagtcttaggatcaaatttttgatcaaacattcacccattttaagtcatattcaata |
42911002 |
T |
|
| Q |
201 |
aactattatactcaaaatgtctaattgaggaaatagctaggtttttggatgtttaattagcnnnnnnn-taaaattagacaaatcaaataattgaaggtt |
299 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42911003 |
aattattatactcaaaatgtctaattgaggaaatagctaggtttttggatgtttaattagcaaaaaaaataaaattagacaaatcaaataattgaaggtt |
42911102 |
T |
|
| Q |
300 |
tgcatacatacatcccagatataagcagttccagataaagcacctcccacaaggtatatgccttcttttgtgcaagaaagtggcccaatggcttccactg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42911103 |
tgcatacatacatcccagatataagcagttccagataaagcacctcccacaaggtatatgccttcttttgtgcaagaaagtggcccaatggcctccactg |
42911202 |
T |
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| Q |
400 |
tgtaattcaaaagtggttgttgcggctgaaataataaaatataagtnnnnnnntagagattttgacatgatatttagtttaaaagatataaaatgcaata |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42911203 |
tgtaattcaaaagtggttgttgcggctgaaataataaaatataagtaaaaaaatagagattttgacatgatatttaatttaaaagatataaaatgcaata |
42911302 |
T |
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| Q |
500 |
ttttggtcataattattgaactttcatggtagtatatgctagtaagcaataagcacaagtaatgtttaataagccatc |
577 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42911303 |
ttttggtcataattattgaactttcatggtagtatatgctagtaagcaataagcacaagtaatgtttaataagccatc |
42911380 |
T |
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