View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6488_high_4 (Length: 491)
Name: NF6488_high_4
Description: NF6488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6488_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 44 - 261
Target Start/End: Original strand, 43971218 - 43971441
Alignment:
| Q |
44 |
agatctcaaaagctcaactctctcgcacattttagacacggtaatgcttgtctagaatttttcacacagaaaatcaagactatttcnnnnnnnnngtt-- |
141 |
Q |
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| T |
43971218 |
agatctcaaaagctcaactctcttgcacattttagacacggtaatgtttgtctaaaatttttcacacagaaaatcaagactatttctttttttttttttt |
43971317 |
T |
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| Q |
142 |
----cgaaagagatgagattccnnnnnnntcaagactatttcttctagatttgagactctcatcatgggttaagttggctcctctaaattggtactagag |
237 |
Q |
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| T |
43971318 |
tggtcgaaagagatgagattccaaaaaaatcaagactatttcttctagatttgagactctcatcatgggctaagttggctcctctgaattggtgttaggg |
43971417 |
T |
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| Q |
238 |
gttgcaattccttcaagtttaggg |
261 |
Q |
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| T |
43971418 |
gttgcaattccttcaagtttaggg |
43971441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 328 - 485
Target Start/End: Original strand, 43971487 - 43971647
Alignment:
| Q |
328 |
aaggataaggatgtcttttatcctcttcattgacnnnnnnng---tctaatgataattgaaggatggtaatcaagatctggcgcttgacaaatcacaacc |
424 |
Q |
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| T |
43971487 |
aaggataaggatgtattttatcctcttcattgacaaaaaaaaaattctaatgataattgaaggatggtaatcaagatctggcgcttgacaaatcacaacc |
43971586 |
T |
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| Q |
425 |
ttcatatcaaatcccataaaatcttgcactaatcagatttccatccactctttcttctcac |
485 |
Q |
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| T |
43971587 |
ttcatatcaaatcccataaaatcttgcactaatcagatttccatccactctttcttgtcac |
43971647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 43971162 - 43971201
Alignment:
| Q |
19 |
agactatttttcaagatatagacttagatctcaaaagctc |
58 |
Q |
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| T |
43971162 |
agactatttttcaagatatagacttagatctcaaaagctc |
43971201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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