View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6488_high_5 (Length: 455)
Name: NF6488_high_5
Description: NF6488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6488_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Original strand, 31852202 - 31852613
Alignment:
| Q |
20 |
cattgttccacctacagatatatttttaagacatttttcatcttatgtcaattgtaaagctaaagataatgcaattggtcttctattcttgaactttttg |
119 |
Q |
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| T |
31852202 |
cattgttccagctacagatatatttttaagacatttttcatcttatgtcaattgtaaagctaaagataatgcaattggtcttctattcttgaactttttg |
31852301 |
T |
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| Q |
120 |
tccttatttatttccactattactggatttttgcagtgtcaattactcaatatcagttattgccctccaacagaagacagcattccacaagctaaagatt |
219 |
Q |
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| T |
31852302 |
tccttatttatttccactattactggatttttgcagtgtcaattactcaatatcagttattgccctccaacagaagacagcattccacaagctaaagatt |
31852401 |
T |
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| Q |
220 |
tggtaatattttcataagagtttaaggagtatactgtcaccgtaaattagttttacacccacatacaatgagaaattttcatatttccaagtcataccat |
319 |
Q |
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| T |
31852402 |
tggtaatattttcataagagtttaaggagtatactgtcaccgtaaattagttttacacccacatacaatgagaaattttcatatttccaagtcataccat |
31852501 |
T |
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| Q |
320 |
caatttaaaaaatgcaattacaaaaattgagtgatgcggcaaaataatgaattttcattagatgtctgtgtaaaactgatttaaactgacatggttgttc |
419 |
Q |
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| T |
31852502 |
caatttaaaaaatgcaattacaaaaattgagtgatgcggcaaaataatgaattttcattagatgtctgtgtaaaactgatttaaactgacatggttgttc |
31852601 |
T |
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| Q |
420 |
aattttatgtga |
431 |
Q |
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| T |
31852602 |
aattttatgtga |
31852613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 31561064 - 31561123
Alignment:
| Q |
138 |
attactggatttttgcagtgtcaattactcaatatcagttattgccctccaacagaagac |
197 |
Q |
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| T |
31561064 |
attactggattttggcagtgtcaattactcaatatcagttacagccctccaacaaaagac |
31561123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 31558960 - 31559142
Alignment:
| Q |
20 |
cattgttccacctacagatatatttttaagac--atttttcatcttatgtcaattgtaaagctaaagataatgcaattggtcttctattcttgaacttt- |
116 |
Q |
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| T |
31558960 |
cattgttcaagctacatatatatttttaggactcatttttcattttatgtcaaatgtatctctgtagataattgaattggccttctattcttgaattata |
31559059 |
T |
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| Q |
117 |
-ttgtccttatttatttccactattactggatttttgcagtgtcaattactcaatatcagttattgccctccaacagaagaca |
198 |
Q |
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| T |
31559060 |
tttgtctttatttttccccatcattactggattttggctgtgcaaattattaaatatcagttacagccctccaacagaagaca |
31559142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 31556072 - 31556132
Alignment:
| Q |
138 |
attactggatttttgcagtgtcaattactcaatatcagttattgccctccaacagaagaca |
198 |
Q |
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| T |
31556072 |
attactggattttggcagtgcaaattaatcagtatcagttacagccctccaactgaagaca |
31556132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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