View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6488_high_6 (Length: 410)
Name: NF6488_high_6
Description: NF6488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6488_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 3308520 - 3308138
Alignment:
| Q |
18 |
attacttcatgaaacaggcggttgccgcccgtaacaacttcgcggctgcgcattcctcctacgccgcctcactcaagaacaccggcgcggctctcataga |
117 |
Q |
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| T |
3308520 |
attacttcatgaaacaggcggttgccgcccgtaacaacttcgcggctgcgcattcctcctacgcagcctcactcaagaacaccggcgcggctctcataga |
3308421 |
T |
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| Q |
118 |
ttttgcacaaggagaacaacaacaaaatcttttattctctccttcttatgatgttcctttgcctcctcctcctcttcctgatttgcctgctgctctccgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308420 |
ttttgcacaaggagaacaacaacaaaatcttttattctctccttcttatgatgttcctttgcctcctcctcctcttcctgatttgcctgctgctctccgg |
3308321 |
T |
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| Q |
218 |
cgtgctattaccatgccggagtttgaatcagacatggttgtggaagaggaagaggatggtgatggtgatgaagaagttgttggaagagtgaaagagagag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308320 |
cgtgctattaccatgccggagtttgaatcagacatggttgtggaagaggaagaggatggtgatggtgatgaagaagttgttggaagagtgaaagagagag |
3308221 |
T |
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| Q |
318 |
tgaatatggatatgattcaagtgttgagtgaagttgataatcattttataatggcttctgaagctgctcgcggtgtttctgtg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308220 |
tgaatatggatatgattcaagtgttgagtgaagttgataatcattttataatggcttctgaagctgctcgcggtgtttctgtg |
3308138 |
T |
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