View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6488_low_10 (Length: 356)
Name: NF6488_low_10
Description: NF6488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6488_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 54219131 - 54219455
Alignment:
| Q |
13 |
aaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaaggctgtgcaatctccctga |
112 |
Q |
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| T |
54219131 |
aaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaaggctgtgcaatctccctga |
54219230 |
T |
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| Q |
113 |
acaagaaccaatatacaagtcaat----gtaaagaaataatattagttgtgagacaagacataagaagtagaagaaatgatgcaagatataagatatacc |
208 |
Q |
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| T |
54219231 |
acaagaaccaatatacaagtcaattaatgtaaagaaataatattagttgtgagacaagacataagaagtagaagaaatgatgcaagatataagatatacc |
54219330 |
T |
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| Q |
209 |
ttggaaatgtgaagaacttccagtttaggagttttacggagaatgtctactaatagttcacaactaacataacaataccccaaattaaaatcatgtcaag |
308 |
Q |
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| T |
54219331 |
ttggaaatgtgaagaacttccagtttaggagttttacggagaatgtctactaatagttcacaactaacataaaaatacccc-----aaaatcatgtcaag |
54219425 |
T |
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| Q |
309 |
tttcgtcaaattgttgaatgaaggcaaaag |
338 |
Q |
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| T |
54219426 |
tttcgtcaaattgttgaatgaaggcaaaag |
54219455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 31217525 - 31217613
Alignment:
| Q |
7 |
tccaagaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaagg |
95 |
Q |
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| T |
31217525 |
tccacgaaaatctgaaatatcacatgatttgagagaagatttgaaacagcaaggcagtgaatctgatgtccagtcttcactatccaagg |
31217613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 31217729 - 31217790
Alignment:
| Q |
213 |
aaatgtgaagaacttccagtttaggagttttacggagaatgtctactaatagttcacaacta |
274 |
Q |
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| T |
31217729 |
aaatgtgaagaaattctagtttaggactctttcggagaatgtctgctaatacttcacaacta |
31217790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 17595374 - 17595307
Alignment:
| Q |
7 |
tccaagaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatg |
74 |
Q |
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| T |
17595374 |
tccaagaaaatctgaaatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatg |
17595307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 14728111 - 14728178
Alignment:
| Q |
7 |
tccaagaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatg |
74 |
Q |
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| T |
14728111 |
tccaagaaaatctgatatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatg |
14728178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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