View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6488_low_11 (Length: 343)
Name: NF6488_low_11
Description: NF6488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6488_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 35303775 - 35304091
Alignment:
| Q |
16 |
tcatctactttacacgtgagctccatcatacaaatatcaggctccacatgagtgctgatacttggaaaggatcttcgtcaacttttattggtggttcttc |
115 |
Q |
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| T |
35303775 |
tcatctactttacacatgagctccatcatacaaatatcaggctccacatgagtgctgatacttggaaaggatcttcgtcaacttttataggtggttcttc |
35303874 |
T |
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| Q |
116 |
aaagactaaacattcttcttcaattgtattttgaatcatatctctaagatgaatacaagaattagtatgatggtcataagtagtaaaatactttcttcct |
215 |
Q |
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| T |
35303875 |
aaagactaaacattcttcttcaattgtattttgaatcatatctctaagacgaatacaagaattagtatgatggtcataagtagtataatactttcttcct |
35303974 |
T |
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| Q |
216 |
caaatttgttttggaagaagaattttatgacatttacttaataatatttacttatctttttaaaagaatatcaaatatttaatcatatttgttttatgtc |
315 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35303975 |
caaatttgtttcggaagaagaattttatgacatttacttaataatatttacttatctttttaaaagaatatcaaatatttaatcatatttgttttatgtc |
35304074 |
T |
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| Q |
316 |
aaacacatattcttcga |
332 |
Q |
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|||||||| || ||||| |
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| T |
35304075 |
aaacacatgtttttcga |
35304091 |
T |
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