View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6488_low_13 (Length: 303)
Name: NF6488_low_13
Description: NF6488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6488_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 8353293 - 8353021
Alignment:
| Q |
18 |
catctttggcatgatgaacatcagtatggcaaattccacaatacaatatctttatagtcacatcagtaccaccgttctcccttaatacatgaaattgaaa |
117 |
Q |
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| T |
8353293 |
catctttggcatgatggacatcagtatggcaaattccacaatacaatatctttatagtcacatcagtaccaccgttctcccttaatacatgaaattgaaa |
8353194 |
T |
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| Q |
118 |
ttgaaattgaggagttaagatcaaaaaggtactacaatatatacaagaatgcatgaaataaaagatagatagttaccttcttttgaaggtgtatggggta |
217 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
8353193 |
ttgaa------gagttaagatcaaaaaggtactacaatatatacaagaatgcatgaaataaataaaagatagttaccttcttttgaaggtgtatggggta |
8353100 |
T |
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| Q |
218 |
atcttgccggaagaatcatgagctgcccaaccagatacagtttgtgtgtggttaggagtagtcttagccattgatatga |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8353099 |
atcttgccggaagaatcatgagctgcccaaccagatacagtttgtgtgtggttaggagtagtcttagccattgatatga |
8353021 |
T |
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