View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6488_low_14 (Length: 280)
Name: NF6488_low_14
Description: NF6488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6488_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 42234150 - 42233881
Alignment:
| Q |
1 |
gagtggagaaatctgaggccgttggcgagagactaaaggaggctcaacatattaacaaatcactgtctgcacttggcgatgttatctccgctttggcaca |
100 |
Q |
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| T |
42234150 |
gagtggagaaatctgaggccgttggcgagagactaaaggaggctcaacatattaacaaatcactgtctgcacttggcgatgttatctccgctttggcaca |
42234051 |
T |
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| Q |
101 |
gaagagtcaacatattccttacagaaatagcaagcttacacaagttttacaagattcattaggtaaccatgctatctgaatattgatatttaatatattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42234050 |
gaagagtcaacatattccttacagaaatagcaagcttacacaagttttacaagattcattaggtaaccatgctatctgaatattgatatttaatatattt |
42233951 |
T |
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| Q |
201 |
ggataaaaataacgtgataagatcatgtgggaatgtagtgattttatattaaacaacaacattgtctgtg |
270 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42233950 |
ggataaaaataacgtgataagatcatgtgggaacgtagtgattttatattaaacaacaacattgtctgtg |
42233881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 24166368 - 24166210
Alignment:
| Q |
9 |
aaatctgaggccgttggcgagagactaaaggaggctcaacatattaacaaatcactgtctgcacttggcgatgttatctccgctttggcacagaagagtc |
108 |
Q |
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| T |
24166368 |
aaatctgaagctgttggtgagagactaaaggaggcccaacatattaatagatcactttcagcacttggagatgttatttctgctttggcacaaaaaagtc |
24166269 |
T |
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| Q |
109 |
aacatattccttacagaaatagcaagcttacacaagttttacaagattcattaggtaac |
167 |
Q |
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| T |
24166268 |
cacatatcccttacagaaatagcaagctcacacaagttttacaagattctttaggtaac |
24166210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 40982468 - 40982371
Alignment:
| Q |
36 |
aaggaggctcaacatattaacaaatcactgtctgcacttggcgatgttatctccgctttggcacagaagagtcaacatattccttacagaaatagcaa |
133 |
Q |
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||||||||||| ||||| ||||||||||| ||||||||||| |||||||| | ||| |||| || ||||| | |||| | || || ||||||||||| |
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| T |
40982468 |
aaggaggctcagcatataaacaaatcactatctgcacttggagatgttatatttgctctggctcaaaagagcccacatgtgccatatagaaatagcaa |
40982371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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