View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6488_low_15 (Length: 261)
Name: NF6488_low_15
Description: NF6488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6488_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 32118663 - 32118420
Alignment:
| Q |
1 |
catgggtgcttacgtatcccttctcgaatacaacaacatcgagggtatgattctattctctgagctctcacgtcgtcggatccgcagtgttagcagtctc |
100 |
Q |
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| T |
32118663 |
catgggtgcttacgtatcccttctcgaatacaacaacatcgagggtatgattctattctctgagctctcacgtcgtcggatccgcagtgttagcagtctc |
32118564 |
T |
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| Q |
101 |
atcaaggttggtcgaatcgaaccggtgatggttcttcgtgttgataaggaaaagggttacattgatcttagtaaacgtagagtttctgaagaagatattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32118563 |
atcaaggttggtcgaatcgaaccggtgatggttcttcgtgttgataaggaaaagggttacattgatcttagtaaacgtagagtttctgaagaagatattc |
32118464 |
T |
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| Q |
201 |
aagcttgtgaagaaaggtataataagagtaagcttgtgcattct |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32118463 |
aagcttgtgaagaaaggtataataagagtaagcttgtgcattct |
32118420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 32104894 - 32104651
Alignment:
| Q |
1 |
catgggtgcttacgtatcccttctcgaatacaacaacatcgagggtatgattctattctctgagctctcacgtcgtcggatccgcagtgttagcagtctc |
100 |
Q |
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||||||||| ||||| || ||||||||||||||||| ||||||||||||||||| ||||| ||||| || || ||||| || || ||||||| |||||| |
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| T |
32104894 |
catgggtgcatacgtttcacttctcgaatacaacaatatcgagggtatgattctgttctccgagctttctcgccgtcgaattcgtagtgttaacagtctg |
32104795 |
T |
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| Q |
101 |
atcaaggttggtcgaatcgaaccggtgatggttcttcgtgttgataaggaaaagggttacattgatcttagtaaacgtagagtttctgaagaagatattc |
200 |
Q |
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| T |
32104794 |
atcaaggttggtcgaaccgaaccggtgatggttcttcgtgttgacaaagaaaagggttacattgatcttagtaaacgtagggtttctgaagaagatattc |
32104695 |
T |
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| Q |
201 |
aagcttgtgaagaaaggtataataagagtaagcttgtgcattct |
244 |
Q |
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| T |
32104694 |
aagcttgtgaagaaaggtataataagagtaaacttgtgcattct |
32104651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 32110662 - 32110426
Alignment:
| Q |
1 |
catgggtgcttacgtatcccttctcgaatacaacaacatcgagggtatgattctattctctgagctctcacgtcgtcggatccgcagtgttagcagtctc |
100 |
Q |
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||||||||||||||| || || ||||||||||||||||||||||| |||||||| ||||||||||| || || |||||||| || ||||| ||||||||| |
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| T |
32110662 |
catgggtgcttacgtttcactcctcgaatacaacaacatcgagggaatgattctgttctctgagctttctcgccgtcggattcgtagtgtaagcagtctc |
32110563 |
T |
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| Q |
101 |
atcaaggttggtcgaatcgaaccggtgatggttcttcgtgttgataaggaaaagggttacattgatcttagtaaacgtagagtttctgaagaagatattc |
200 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |
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| T |
32110562 |
atcaaagtgggtcgaatcgaaccggtgatggttcttcgtgttgataaggaaaagggttacatcgatcttagtaaacgtagggtttctgaggaagatattc |
32110463 |
T |
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| Q |
201 |
aagcttgtgaagaaaggtataataagagtaagcttgt |
237 |
Q |
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|| ||||||||||| |||||||||||||||||||||| |
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| T |
32110462 |
aaacttgtgaagaacggtataataagagtaagcttgt |
32110426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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