View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6488_low_16 (Length: 256)
Name: NF6488_low_16
Description: NF6488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6488_low_16 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0938 (1 HSPs) |
| | |
|
| [»] scaffold0062 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 15647612 - 15647369
Alignment:
| Q |
1 |
acttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15647612 |
acttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttcccaccaccattctcaaacgat |
15647513 |
T |
|
| Q |
101 |
tagccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15647512 |
tagccaagactttagataaaattttataaacactactcaccaagcctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagc |
15647413 |
T |
|
| Q |
201 |
tatgaaagaagaattaagacctttcgttattttaccatgatgat |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15647412 |
tatgaaagaagaattaagacctttcgttattttcccatgatgat |
15647369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 23156693 - 23156450
Alignment:
| Q |
3 |
ttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttc-----caaccaccattctcaaac |
97 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||||| || ||||||||||| |||||||||||||| ||||||| |||||||||||||||| | |
|
|
| T |
23156693 |
ttcatttgctatcagaatcccatccaaaatctgtctacccttaataaaagcagattgagaagcagacaccacacttcgcttccaaccaccattctcaatc |
23156594 |
T |
|
| Q |
98 |
gattagccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaa |
197 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
23156593 |
gattggccaggactttagataaaattttataaacactactcaccaaggctataggaagaaaatctgccaccctttgagggctttcaacctttggaatcaa |
23156494 |
T |
|
| Q |
198 |
agctatgaaagaagaattaagacctttcgttattttaccatgat |
241 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||| |||||||||| |
|
|
| T |
23156493 |
agctacgaaagaagaattaaggcctttagttaacttaccatgat |
23156450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 17825324 - 17825083
Alignment:
| Q |
3 |
ttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgatta |
102 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||| ||||||||||||| |||||||||||||||||| | || |||||| ||||||||||||| |
|
|
| T |
17825324 |
ttcattagctattagaatcccatccaaaatctgtctacgcgttataaaagcagattgagaagcagacacaacattccctaccaccgttctcaaacgattg |
17825225 |
T |
|
| Q |
103 |
gccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagcta |
202 |
Q |
| |
|
|| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| || || ||||||||||||||| ||| |
|
|
| T |
17825224 |
gctaaaacttttgataaaattttataaacactactcaccaaagctataggacgaaaatcagccacccgttgagggctttcgacctttggaatcaaaacta |
17825125 |
T |
|
| Q |
203 |
tgaaagaagaattaagacctttcgttattttaccatgatgat |
244 |
Q |
| |
|
| |||| || ||||| ||||| |||| |||||||| |||| |
|
|
| T |
17825124 |
taaaagtggagttaaggcctttagttaacttaccatggtgat |
17825083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 25136696 - 25136894
Alignment:
| Q |
4 |
tcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattag |
103 |
Q |
| |
|
|||||||| |||| ||||||||||| | | |||||||| || ||||||||||||||||||| |||||||||| | ||||| ||| ||| || | ||||| |
|
|
| T |
25136696 |
tcattagcaatcaaaataccatctagagtttgtctacccttaataaaagcagactgagaagtagacacaacattaccaacaacctttcgtaatctattag |
25136795 |
T |
|
| Q |
104 |
ccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagcta |
202 |
Q |
| |
|
|||| ||||| | | |||||||||||||||||||| ||| | || ||| ||||| ||||| | ||||||| | || |||||||||||||| |||| |
|
|
| T |
25136796 |
ccaacactttgaagagaattttataaacactactcatcaaagagattagacagaaatccgccactcgttgaggattctcaacctttggaatcaaggcta |
25136894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39982781 - 39982720
Alignment:
| Q |
1 |
acttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgaga |
62 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | | ||||| |||||||| |||||||| |
|
|
| T |
39982781 |
acttcattagctatcaggataccatctaaaatttagttccctttaataaaagctgactgaga |
39982720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 9827259 - 9827020
Alignment:
| Q |
3 |
ttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgatta |
102 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
9827259 |
ttcatttgctatcagaataccatccaaaatctgtctaccttttataaaagcagactgagaagcagacaccacacttccaaccaccattctcaaatgatta |
9827160 |
T |
|
| Q |
103 |
gccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagcta |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
9827159 |
gccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactttcaacctttggaatcaaagcta |
9827060 |
T |
|
| Q |
203 |
tgaaagaagaattaagacctttcgttattttaccatgatg |
242 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
9827059 |
tgaaagaagaattaaggcctttagttaacttaccatgatg |
9827020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 17152353 - 17152114
Alignment:
| Q |
3 |
ttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgatta |
102 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
17152353 |
ttcatttgctatcagaataccatccaaaatttgtctaccttttataaaagcagactgagaagcagacaccacacttcctaccaccattctcaattgatta |
17152254 |
T |
|
| Q |
103 |
gccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagcta |
202 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
17152253 |
gccaagacttttgataaaattttataaacactactcaccaaggctataggactaaaatctgccaccctttgagggctttcaacctttggaatcaaagcta |
17152154 |
T |
|
| Q |
203 |
tgaaagaagaattaagacctttcgttattttaccatgatg |
242 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
17152153 |
tgaaagaagaattaaggcctttagttaacttaccatgatg |
17152114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 3516370 - 3516602
Alignment:
| Q |
10 |
gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga |
109 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||| || |||||||||||||||||||||||||| |||||||||| |||| ||||||| ||||| ||||| | |
|
|
| T |
3516370 |
gctatcagaataccatccaaaatatgtttacccttaataaaagcagactgagaagcagacaccacacttccaatcacctttctcaatcgattggccaaaa |
3516469 |
T |
|
| Q |
110 |
ctttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagctatgaaaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
3516470 |
ctttagataaaattttataaacactacttaccaaggctataggacgaaaatccgctaccctttgaggactttcaacctttggaatcaaagctatgaaagt |
3516569 |
T |
|
| Q |
210 |
agaattaagacctttcgttattttaccatgatg |
242 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||| |
|
|
| T |
3516570 |
agaattaaggcctttagttaacttaccatgatg |
3516602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 23823391 - 23823632
Alignment:
| Q |
3 |
ttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgatta |
102 |
Q |
| |
|
|||||||||||| || || ||||| |||||||||||||| ||||||||||| || |||||||||||||||||| | || |||||||||||||||||||| |
|
|
| T |
23823391 |
ttcattagctattaggatgccatccaaaatctgtctaccctttataaaagctgattgagaagcagacacaacagtccccaccaccattctcaaacgattg |
23823490 |
T |
|
| Q |
103 |
gccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagcta |
202 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||| |||| ||||||||||||||| ||| |
|
|
| T |
23823491 |
gccaaaacttttgataaaattttataaacactactcaccaaagcaataggacgaaaatcagccacccgttgagggttgtcgacctttggaatcaaaacta |
23823590 |
T |
|
| Q |
203 |
tgaaagaagaattaagacctttcgttattttaccatgatgat |
244 |
Q |
| |
|
| |||| |||||||| ||||| |||| |||||||| |||| |
|
|
| T |
23823591 |
taaaagtggaattaaggcctttagttaacttaccatggtgat |
23823632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 10755758 - 10755977
Alignment:
| Q |
19 |
ataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaagactttagata |
118 |
Q |
| |
|
|||||||| | ||| |||||||| || |||||||| ||||| ||| ||||||| || | ||||||||| |||| | ||||||||||| |||||||||| |
|
|
| T |
10755758 |
ataccatcgagaatttgtctacccttaataaaagcggactgtgaatcagacaccaccttaccaaccacctttctaagccgattagccaaaactttagata |
10755857 |
T |
|
| Q |
119 |
aaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagctatgaaagaagaattaag |
218 |
Q |
| |
|
|||||||||| |||||||||||||| | || ||||||||||| ||||||| |||||| || ||||| ||||| |||||||| |||| || ||||| |
|
|
| T |
10755858 |
aaattttatacacactactcaccaaagagattggacgaaaatcagccacccgctgaggagactcaaccttaggaattaaagctataaaagttgagttaag |
10755957 |
T |
|
| Q |
219 |
acctttcgttattttaccat |
238 |
Q |
| |
|
|||||| |||| |||||||| |
|
|
| T |
10755958 |
acctttggttagtttaccat |
10755977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 21966270 - 21966513
Alignment:
| Q |
1 |
acttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgat |
100 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21966270 |
acttcattagctatcagaatagcatccaaaatctgtctaccttttatgaaagcagactgagaagcagacaccacacttccaaccaccattctcaaacgat |
21966369 |
T |
|
| Q |
101 |
tagccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
21966370 |
tagccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatcagccaccctttgaggactttcaaactttggaatcaaagc |
21966469 |
T |
|
| Q |
201 |
tatgaaagaagaattaagacctttcgttattttaccatgatgat |
244 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
21966470 |
tatgaacgaagaattaaggcctttcgttaatttaccatgatgat |
21966513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 221
Target Start/End: Complemental strand, 30190596 - 30190464
Alignment:
| Q |
89 |
ttctcaaacgattagccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctt |
188 |
Q |
| |
|
||||||| | ||| ||||| ||||| || | |||||||||||||||||||||||| | || ||||| ||||| ||||||| || ||||||| ||||| |
|
|
| T |
30190596 |
ttctcaatctatttgccaacactttggaaagaattttataaacactactcaccaaagaaattggacggaaatcagccacccgttacggactgttgacctt |
30190497 |
T |
|
| Q |
189 |
tggaatcaaagctatgaaagaagaattaagacc |
221 |
Q |
| |
|
||| ||||||||||| || | |||||| ||||| |
|
|
| T |
30190496 |
tgggatcaaagctataaaggtagaattgagacc |
30190464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 13534252 - 13534302
Alignment:
| Q |
4 |
tcattagctatcagaataccatctaaaatctgtctaccttttataaaagca |
54 |
Q |
| |
|
||||| ||||||||||| |||||||||| ||||||||||||| ||||||| |
|
|
| T |
13534252 |
tcattggctatcagaattgcatctaaaatttgtctaccttttacaaaagca |
13534302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 12123272 - 12123504
Alignment:
| Q |
10 |
gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga |
109 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || | ||||||||||||||||||||| || |||||||||| |||| ||||||| ||||| ||||| | |
|
|
| T |
12123272 |
gctatcagaataccatccaaaatctgtctacccttaacaaaagcagactgagaagcagaaactacacttccaatcacctttctcaaccgattggccaaaa |
12123371 |
T |
|
| Q |
110 |
ctttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagctatgaaaga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
12123372 |
ctttagataaaattttataaacactactcaccaaggctataggacgaaaatctgctaccctttgaggactttcaacctttggaatcaaagctatgaaagt |
12123471 |
T |
|
| Q |
210 |
agaattaagacctttcgttattttaccatgatg |
242 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||| |
|
|
| T |
12123472 |
agaattaaggcctttagttaacttaccatgatg |
12123504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 37074135 - 37073989
Alignment:
| Q |
1 |
acttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
37074135 |
acttcattagctatcagaataccatccaaaatctgtctaccttttataaaagcagactgagaagcagacaccacacttccaaccaccattcgcaaacgat |
37074036 |
T |
|
| Q |
101 |
tagccaagactttagataaaattttataaacactactcaccaaggct |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37074035 |
tagccaagactttagataaaattttataaacactactcaccaaggct |
37073989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 588463 - 588585
Alignment:
| Q |
3 |
ttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgatta |
102 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||| |||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
588463 |
ttcatttgctatcagaataccatccaaaatctgtcttccctttataaaagcggactgagaagcaaacaccacactcccaaccaccattctcaatcgattg |
588562 |
T |
|
| Q |
103 |
gccaagactttagataaaatttt |
125 |
Q |
| |
|
||||| ||||| ||||||||||| |
|
|
| T |
588563 |
gccaaaacttttgataaaatttt |
588585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 242
Target Start/End: Original strand, 589906 - 590029
Alignment:
| Q |
119 |
aaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagctatgaaagaagaattaag |
218 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || || |||||||||||||| || || |||| |||||||| |
|
|
| T |
589906 |
aaattttataaacactactcaccaaagctataggtcgaaaatctgccaccctttgagggctttcaacctttggaatcaacgcgataaaagtggaattaag |
590005 |
T |
|
| Q |
219 |
acctttcgttattttaccatgatg |
242 |
Q |
| |
|
||||| |||| ||||||||||| |
|
|
| T |
590006 |
gcctttagttaacttaccatgatg |
590029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 47554968 - 47555203
Alignment:
| Q |
3 |
ttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgatta |
102 |
Q |
| |
|
|||||| || |||| ||||||||| | ||| |||||||| || ||||| |||||||||||| |||| || ||| | || | |||| |||||||||||||| |
|
|
| T |
47554968 |
ttcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagaatcagataccacattacctatcacccttctcaaacgatta |
47555067 |
T |
|
| Q |
103 |
gccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagcta |
202 |
Q |
| |
|
||||| || || ||||||||||| || |||||||||||||| | ||| || | |||||| ||||| | |||||| || ||||| ||||| ||||| | |
|
|
| T |
47555068 |
gccaatacctttgataaaattttgtacacactactcaccaaagatattggcctaaaatcagccacacgctgaggagattccaccttaggaattaaagcaa |
47555167 |
T |
|
| Q |
203 |
tgaaagaagaattaagacctttcgttattttaccat |
238 |
Q |
| |
|
| |||| |||||||||||||| |||| ||||||| |
|
|
| T |
47555168 |
taaaagtggaattaagacctttagttaacttaccat |
47555203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 22864290 - 22864055
Alignment:
| Q |
3 |
ttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgatta |
102 |
Q |
| |
|
|||||| || |||| ||||||||| | ||| |||||||| || ||||| |||||||||||| |||| || ||| | || | |||| |||||||||||||| |
|
|
| T |
22864290 |
ttcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagaatcagataccacattacctatcacccttctcaaacgatta |
22864191 |
T |
|
| Q |
103 |
gccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagcta |
202 |
Q |
| |
|
||||| || || ||||||||||| || |||||||||||||| | ||| || | |||||| ||||| | |||||| || ||||| ||||| |||| | |
|
|
| T |
22864190 |
gccaatacctttgataaaattttgtacacactactcaccaaagatattggcctaaaatcagccacacgctgaggagattccaccttaggaattaaagtaa |
22864091 |
T |
|
| Q |
203 |
tgaaagaagaattaagacctttcgttattttaccat |
238 |
Q |
| |
|
| |||| |||||||||||||| |||| ||||||| |
|
|
| T |
22864090 |
taaaagtggaattaagacctttagttaacttaccat |
22864055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 47550503 - 47550643
Alignment:
| Q |
3 |
ttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgatta |
102 |
Q |
| |
|
|||||| || |||| ||||||||| | ||| |||||||| || ||||| |||||||||||| |||| || ||| | || | |||| |||||||||||||| |
|
|
| T |
47550503 |
ttcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagaatcagataccacattacctatcacccttctcaaacgatta |
47550602 |
T |
|
| Q |
103 |
gccaagactttagataaaattttataaacactactcaccaa |
143 |
Q |
| |
|
||||| || || ||||||||||| || |||||||||||||| |
|
|
| T |
47550603 |
gccaatacctttgataaaattttgtacacactactcaccaa |
47550643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 20704035 - 20703926
Alignment:
| Q |
4 |
tcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattag |
103 |
Q |
| |
|
|||||||| |||| ||| ||||| | ||| |||||||| ||||||||||| ||||||||| ||||||| ||| |||| |||||| ||||||| | ||| | |
|
|
| T |
20704035 |
tcattagcaatcaaaatcccatcaagaatttgtctaccctttataaaagcggactgagaaccagacaccacatttcccaccacccttctcaatctattcg |
20703936 |
T |
|
| Q |
104 |
ccaagacttt |
113 |
Q |
| |
|
|||| ||||| |
|
|
| T |
20703935 |
ccaaaacttt |
20703926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 20872079 - 20871970
Alignment:
| Q |
4 |
tcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattag |
103 |
Q |
| |
|
|||||||| |||| ||| ||||| | ||| |||||||| ||||||||||| ||||||||| ||||||| ||| |||| |||||| ||||||| | ||| | |
|
|
| T |
20872079 |
tcattagcaatcaaaatcccatcaagaatttgtctaccctttataaaagcggactgagaaccagacaccacatttcccaccacccttctcaatctattcg |
20871980 |
T |
|
| Q |
104 |
ccaagacttt |
113 |
Q |
| |
|
|||| ||||| |
|
|
| T |
20871979 |
ccaaaacttt |
20871970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 2895883 - 2896122
Alignment:
| Q |
3 |
ttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgatta |
102 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||| || | ||||||| |||||||||| ||||| ||||| ||||||||| ||||||| ||||| |
|
|
| T |
2895883 |
ttcatttgctatcagaataccatccaaaatctgtctacccttaacaaaagcacactgagaagccgacaccacactaccaaccacctttctcaaccgattg |
2895982 |
T |
|
| Q |
103 |
gccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagcta |
202 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
2895983 |
gccaaaactttagacaaaattttataaacactactcaccaaggctataggacgaaaatcagctaccctttgaggactttcaacctttggaatcaaagcta |
2896082 |
T |
|
| Q |
203 |
tgaaagaagaattaagacctttcgttattttaccatgatg |
242 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
2896083 |
tgaaagaagaattaaggcctttagttaacttaccatgatg |
2896122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 18293931 - 18293717
Alignment:
| Q |
10 |
gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga |
109 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||| |||||||||| |||| ||||||| ||||| ||||| | |
|
|
| T |
18293931 |
gctatcagaataccatccaaaatctgtctacccttaacaaaagcagactgagaagcagacaccacacttccaatcacctttctcaaccgattggccaaaa |
18293832 |
T |
|
| Q |
110 |
ctttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagctatgaaaga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||| |||| |
|
|
| T |
18293831 |
ctttagataaaattttataaacactactcaccaaggctataggacgaaaatctgctaccctttgagggctttcaacctttggaatcaaagctacgaaaat |
18293732 |
T |
|
| Q |
210 |
agaattaagaccttt |
224 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
18293731 |
agaattaaggccttt |
18293717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 5390060 - 5389920
Alignment:
| Q |
3 |
ttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgatta |
102 |
Q |
| |
|
|||||| || |||| ||||||||| | ||| |||||||| || ||||| |||||||||| | ||||||| ||| | || | |||| |||||||||||||| |
|
|
| T |
5390060 |
ttcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagtatcagacaccacattacctatcacccttctcaaacgatta |
5389961 |
T |
|
| Q |
103 |
gccaagactttagataaaattttataaacactactcaccaa |
143 |
Q |
| |
|
||||| || || ||||||||||| || |||||||||||||| |
|
|
| T |
5389960 |
gccaatacctttgataaaattttgtacacactactcaccaa |
5389920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 26997642 - 26997864
Alignment:
| Q |
7 |
ttagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagcca |
106 |
Q |
| |
|
||||| |||| |||| |||| | ||| ||||| ||||| ||||| |||||||||||||||| ||| || | ||||| ||||||||||| | |||||||| |
|
|
| T |
26997642 |
ttagcaatcaaaatagcatccagaatttgtctccctttaataaaggcagactgagaagcagtcaccactttaccaacaaccattctcaatctattagcca |
26997741 |
T |
|
| Q |
107 |
agactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagctatgaa |
206 |
Q |
| |
|
| ||||| || | ||||||||||||||||| ||||| ||| ||||| ||||||||||| | ||||||||| || |||||||| ||||| ||||| || |
|
|
| T |
26997742 |
acactttggaaaggattttataaacactactaaccaaatatattggacggaaatctgccactcgttgaggactctcgacctttgggatcaaggctataaa |
26997841 |
T |
|
| Q |
207 |
agaagaattaagacctttcgtta |
229 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
26997842 |
agtagaattaagacctttcgtta |
26997864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 49371446 - 49371496
Alignment:
| Q |
3 |
ttcattagctatcagaataccatctaaaatctgtctaccttttataaaagc |
53 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |
|
|
| T |
49371446 |
ttcattagctattagaatcccatccaaaatctgtctaccctttatgaaagc |
49371496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 223256 - 223051
Alignment:
| Q |
3 |
ttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgatta |
102 |
Q |
| |
|
|||||| ||||| | ||| ||||| | ||| |||||||| || ||||||||||| |||||| |||| |||||| |||| |||| ||||||||| ||||| |
|
|
| T |
223256 |
ttcatttgctattaaaatcccatccagaatttgtctacccttgataaaagcagattgagaaccagatacaacatttcccaccatcattctcaatcgattg |
223157 |
T |
|
| Q |
103 |
gccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagcta |
202 |
Q |
| |
|
||||| ||||| || | |||||||||||||||||| ||||| | ||| ||||||||||| ||||||| ||||||||| || ||||| || |||||||||| |
|
|
| T |
223156 |
gccaacactttggaaagaattttataaacactactaaccaaagatatcggacgaaaatcagccacccgttgaggactttcaaccttagggatcaaagcta |
223057 |
T |
|
| Q |
203 |
tgaaag |
208 |
Q |
| |
|
| |||| |
|
|
| T |
223056 |
taaaag |
223051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 29326877 - 29327112
Alignment:
| Q |
3 |
ttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgatta |
102 |
Q |
| |
|
|||||| || |||| ||||||||| | ||| |||||||| || ||||| |||||||||||| ||||||| ||| | || | |||| |||||||||||||| |
|
|
| T |
29326877 |
ttcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagaatcagacaccacattacctatcacccttctcaaacgatta |
29326976 |
T |
|
| Q |
103 |
gccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagcta |
202 |
Q |
| |
|
||||| || || ||||||||||| || |||||||||||||| | ||| || | |||||| ||||| | |||||| || ||||| ||||| ||||| | |
|
|
| T |
29326977 |
gccaatacctttgataaaattttgtacacactactcaccaaagatattggcctaaaatcagccacacgctgaggagattccaccttaggaattaaagcaa |
29327076 |
T |
|
| Q |
203 |
tgaaagaagaattaagacctttcgttattttaccat |
238 |
Q |
| |
|
| |||| |||||||||||||| |||| ||||||| |
|
|
| T |
29327077 |
taaaagtggaattaagacctttagttaacttaccat |
29327112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41767465 - 41767413
Alignment:
| Q |
1 |
acttcattagctatcagaataccatctaaaatctgtctaccttttataaaagc |
53 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| ||| | ||||| |||||||| |
|
|
| T |
41767465 |
acttcattggctatcaggataccatctaaaatttgtttccctttaataaaagc |
41767413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 10800223 - 10799997
Alignment:
| Q |
3 |
ttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgatta |
102 |
Q |
| |
|
|||||| || |||| ||||||||| | ||| |||||||| || ||||| |||||||||||| |||| || ||| | || | |||| |||||||||||||| |
|
|
| T |
10800223 |
ttcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagaatcagataccacattacctatcacccttctcaaacgatta |
10800124 |
T |
|
| Q |
103 |
gccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagcta |
202 |
Q |
| |
|
||||| || || ||||||||||| || |||||||||||||| | ||| || | |||||| ||||| | |||||| || ||||| ||||| ||||| | |
|
|
| T |
10800123 |
gccaatacctttgataaaattttgtacacactactcaccaaagatattggcctaaaatcagccacacgctgaggagattccaccttaggaattaaagcaa |
10800024 |
T |
|
| Q |
203 |
tgaaagaagaattaagacctttcgtta |
229 |
Q |
| |
|
| |||| |||||||||||||| |||| |
|
|
| T |
10800023 |
taaaagtggaattaagacctttagtta |
10799997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 17660509 - 17660577
Alignment:
| Q |
93 |
caaacgattagccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatc |
161 |
Q |
| |
|
||||||||| || || | ||||| |||||||||||||| ||||| |||||| | |||||||||||||| |
|
|
| T |
17660509 |
caaacgattggctaataatttagctaaaattttataaagactacccaccaaagaaataggacgaaaatc |
17660577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0938 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0938
Description:
Target: scaffold0938; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 3586 - 3489
Alignment:
| Q |
120 |
aattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagctatgaaagaagaattaa |
217 |
Q |
| |
|
||||||||||| ||||||||||| | | ||||||||||| ||||||| ||| |||||||| |||||| | ||||||||||| || | |||||||| |
|
|
| T |
3586 |
aattttataaaagctactcaccaaagagactggacgaaaatcagccacccattgcggactgtcgaccttttggatcaaagctataaaggtagaattaa |
3489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 20866 - 20963
Alignment:
| Q |
120 |
aattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagctatgaaagaagaattaa |
217 |
Q |
| |
|
||||||||||| ||||||||||| | | ||||||||||| ||||||| ||| |||||||| |||||| | ||||||||||| || | |||||||| |
|
|
| T |
20866 |
aattttataaaagctactcaccaaagagactggacgaaaatcagccacccattgcggactgtcgaccttttggatcaaagctataaaggtagaattaa |
20963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 31034 - 31131
Alignment:
| Q |
120 |
aattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagctatgaaagaagaattaa |
217 |
Q |
| |
|
||||||||||| ||||||||||| | | ||||||||||| ||||||| ||| |||||||| |||||| | ||||||||||| || | |||||||| |
|
|
| T |
31034 |
aattttataaaagctactcaccaaagagactggacgaaaatcagccacccattgcggactgtcgaccttttggatcaaagctataaaggtagaattaa |
31131 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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