View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6488_low_17 (Length: 234)
Name: NF6488_low_17
Description: NF6488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6488_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 3387017 - 3387200
Alignment:
| Q |
1 |
atgaatgaagaaaaatacaaccacaatacataaagtttccgatttaacttcaatattgagatagaaaactatcattcccaattacatacaaccaagagaa |
100 |
Q |
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| T |
3387017 |
atgaatgaagaaaaatacaaccacaatacataaagtttccgatttaacttcaatattgagatagaaaactatcattcccaattacatacaaccaagagaa |
3387116 |
T |
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| Q |
101 |
gaattatggtaatcatagttatatatcatatagcaaattataaagtagttaatcaaatgataaaaagatctaaattcagaaagg |
184 |
Q |
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| T |
3387117 |
gaattatggtaatcatagttatataccatatagcaaattataaagtagttaatcaaatgataaaaagatctaaattcagaaagg |
3387200 |
T |
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Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 15807174 - 15806993
Alignment:
| Q |
1 |
atgaatgaagaaaaatacaaccacaatacataaagtttccgatttaacttcaatattgagatagaaaactatcattcccaattac----atacaaccaag |
96 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
15807174 |
atgaatgaagaaaaatacaaccacaatacataatgtttccgatttaacttcagtattgagatagaaaactatcattcccaattacatatatacaacaaag |
15807075 |
T |
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| Q |
97 |
agaagaattatggtaatcatagttatatatcatatagcaaattataaagtagttaatcaaatgataaaaagatctaaattca |
178 |
Q |
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| T |
15807074 |
agaagaaatatggtaatcatagttatataccatatagcaaattataaagtagttaaacaaatgataaaaagatctaaattca |
15806993 |
T |
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