View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6488_low_2 (Length: 600)

Name: NF6488_low_2
Description: NF6488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6488_low_2
NF6488_low_2
[»] chr2 (5 HSPs)
chr2 (510-584)||(28220359-28220432)
chr2 (377-501)||(28218023-28218147)
chr2 (393-496)||(8178731-8178834)
chr2 (430-496)||(45328894-45328960)
chr2 (429-488)||(16291553-16291612)
[»] chr4 (3 HSPs)
chr4 (372-501)||(48624748-48624877)
chr4 (450-496)||(27452402-27452448)
chr4 (446-479)||(16001023-16001056)
[»] chr5 (4 HSPs)
chr5 (372-496)||(25924-26048)
chr5 (372-496)||(1289747-1289873)
chr5 (393-496)||(7090193-7090296)
chr5 (397-495)||(21913203-21913301)
[»] chr3 (4 HSPs)
chr3 (372-496)||(51449923-51450047)
chr3 (372-496)||(52137129-52137253)
chr3 (372-464)||(3367764-3367855)
chr3 (429-500)||(9257038-9257109)
[»] chr8 (3 HSPs)
chr8 (430-496)||(15217515-15217581)
chr8 (397-490)||(21239700-21239793)
chr8 (426-493)||(13587653-13587721)
[»] chr1 (1 HSPs)
chr1 (393-496)||(49349652-49349755)
[»] chr6 (2 HSPs)
chr6 (372-496)||(6080387-6080511)
chr6 (430-496)||(20429914-20429980)
[»] scaffold0001 (1 HSPs)
scaffold0001 (431-496)||(440839-440904)


Alignment Details
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 28220359 - 28220432
Alignment:
Q  510 gttaccattgtccaagcttctctattcaacttcgggaagattgatttttggctccgtgaagttgaccgtgaaatc 584  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28220359 gttaccatcgtccaagcttctctattcaacttcgggaagattga-ttttggctccgtgaagttgaccgtgaaatc 28220432  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 377 - 501
Target Start/End: Original strand, 28218023 - 28218147
Alignment:
Q  377 aatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacac 476  Q
    |||||||| || ||| |||||||||||||  |||| |||||||||| ||||||||||| ||||  ||| ||||||||| || |||||||||||||||||     
T  28218023 aatcttctcgtttgatttcctaataagaaagaaatctatctgagaataagtcaccccattcttgcatgtgataagatgttcatctcttttcctaaaacat 28218122  T
Q  477 gtattagttatagtaagatcgaaac 501  Q
    |||||| |||||||| |||| ||||    
T  28218123 gtattaattatagtaggatcaaaac 28218147  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 393 - 496
Target Start/End: Complemental strand, 8178834 - 8178731
Alignment:
Q  393 ttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaa 492  Q
    |||||||||||||  |||| |||||||||| | |  ||||||||||| || | ||||| |||||||||| ||||||| ||||| ||||||| ||||||||    
T  8178834 ttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgataaaatgctcctctattttcctgaaacaagtattagctatagtaa 8178735  T
Q  493 gatc 496  Q
    ||||    
T  8178734 gatc 8178731  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 430 - 496
Target Start/End: Original strand, 45328894 - 45328960
Alignment:
Q  430 ccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 496  Q
    |||||||||| || | ||| ||||||||||||||||||||||||||||||||||  |||||||||||    
T  45328894 ccccactcttgtaagtgatgagatgctcctctcttttcctaaaacacgtattagcgatagtaagatc 45328960  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 429 - 488
Target Start/End: Complemental strand, 16291612 - 16291553
Alignment:
Q  429 accccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttata 488  Q
    ||||||||||| || | |||||||||||||||||||||||| ||||| ||||||| ||||    
T  16291612 accccactcttgtaagtgataagatgctcctctcttttcctgaaacaagtattagctata 16291553  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 501
Target Start/End: Original strand, 48624748 - 48624877
Alignment:
Q  372 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 471  Q
    |||| ||||||| |||  || |||||||||||||  |||| |||||||||| | |  ||||||||||| || | ||| |||||||||||||||||||| |    
T  48624748 aaacaaatcttcctgtcagatttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgattagatgctcctctcttttcctga 48624847  T
Q  472 aacacgtattagttatagtaagatcgaaac 501  Q
    |||| ||||||| |||||||||||| ||||    
T  48624848 aacaagtattagctatagtaagatcaaaac 48624877  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 496
Target Start/End: Original strand, 27452402 - 27452448
Alignment:
Q  450 agatgctcctctcttttcctaaaacacgtattagttatagtaagatc 496  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  27452402 agatgctcatctcttttcctaaaacatgtattagctatagtaagatc 27452448  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 446 - 479
Target Start/End: Complemental strand, 16001056 - 16001023
Alignment:
Q  446 gataagatgctcctctcttttcctaaaacacgta 479  Q
    ||||||||||||||||||||||||||||||||||    
T  16001056 gataagatgctcctctcttttcctaaaacacgta 16001023  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 372 - 496
Target Start/End: Complemental strand, 26048 - 25924
Alignment:
Q  372 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 471  Q
    |||| ||||||  ||||||| ||||||||||||| ||||| |||||||||| |  | | | ||||||| || | |||||||||||||||||| |||| ||    
T  26048 aaacaaatctttatgtatgaattcctaataagaaaaaaatctatctgagaacatattatcgcactcttgtaagtgataagatgctcctctctgttccaaa 25949  T
Q  472 aacacgtattagttatagtaagatc 496  Q
    |||||||||||| |||| |||||||    
T  25948 aacacgtattagctataataagatc 25924  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 372 - 496
Target Start/End: Original strand, 1289747 - 1289873
Alignment:
Q  372 aaaccaatcttcttgtatgacttcctaataagaa-gaaa-atatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcct 469  Q
    |||| ||||||| |||  || ||||||||||||| |||| ||||||||||||| | |  ||| ||||||| || | ||||||||||||||||||||||||    
T  1289747 aaacaaatcttcctgtcggatttcctaataagaaagaaatatatatctgagaacatgagacctcactcttgtaagtgataagatgctcctctcttttcct 1289846  T
Q  470 aaaacacgtattagttatagtaagatc 496  Q
     ||||| ||||||| ||||||||||||    
T  1289847 gaaacaagtattagctatagtaagatc 1289873  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 496
Target Start/End: Complemental strand, 7090296 - 7090193
Alignment:
Q  393 ttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaa 492  Q
    |||||||||||||  ||||  ||||||||| | || | ||| ||||| |||| ||||||||||||| |||||||| || |||||||||||| || |||||    
T  7090296 ttcctaataagaaagaaattcatctgagaacatgttaacccgctcttgtatgtgataagatgctccactcttttcatagaacacgtattagctacagtaa 7090197  T
Q  493 gatc 496  Q
    ||||    
T  7090196 gatc 7090193  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 495
Target Start/End: Complemental strand, 21913301 - 21913203
Alignment:
Q  397 taataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagat 495  Q
    |||||||||  |||| |||||| ||| | | ||||||||| ||||||  ||||||||| ||| |||||| | |||| ||| |||||| |||||||||||    
T  21913301 taataagaaagaaatttatctgtgaacatgccaccccactattatatatgataagatgttccactctttacttaaagcacttattagctatagtaagat 21913203  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 372 - 496
Target Start/End: Original strand, 51449923 - 51450047
Alignment:
Q  372 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 471  Q
    |||| ||||||| |||  || |||||||||||||  |||| |||||||||| | |  ||||||||||| || | |||||||||||||||| ||||||| |    
T  51449923 aaacaaatcttcctgtcggatttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgataagatgctcctctattttcctga 51450022  T
Q  472 aacacgtattagttatagtaagatc 496  Q
    |||| ||||||| ||||||||||||    
T  51450023 aacaagtattagctatagtaagatc 51450047  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 372 - 496
Target Start/End: Complemental strand, 52137253 - 52137129
Alignment:
Q  372 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 471  Q
    |||| ||||||| |||  || |||||||||||||  |||| || ||||||| | |  |||||||||||  | | |||| ||||||||||||||||||| |    
T  52137253 aaacaaatcttcctgtcggatttcctaataagaaagaaatctacctgagaacatgagaccccactcttgaaagtgataggatgctcctctcttttcctga 52137154  T
Q  472 aacacgtattagttatagtaagatc 496  Q
    |||| ||||||| ||||||||||||    
T  52137153 aacaagtattagctatagtaagatc 52137129  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 464
Target Start/End: Complemental strand, 3367855 - 3367764
Alignment:
Q  372 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctctt 464  Q
    |||| ||||||| |||  |||||| |||||||||  |||| ||||| |||| | |||||| ||||||| ||||||||||||||||||||||||    
T  3367855 aaacaaatcttcatgtcagacttcttaataagaaagaaatctatct-agaacatgtcaccgcactcttgtatgcgataagatgctcctctctt 3367764  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 500
Target Start/End: Complemental strand, 9257109 - 9257038
Alignment:
Q  429 accccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatcgaaa 500  Q
    ||||||||||| || | ||||| |||||| |||||||| |||||||| ||||||| ||  ||||||||||||    
T  9257109 accccactcttgtaagtgataaaatgctcatctctttttctaaaacatgtattagctacggtaagatcgaaa 9257038  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 430 - 496
Target Start/End: Original strand, 15217515 - 15217581
Alignment:
Q  430 ccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 496  Q
    |||||||||| || | ||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  15217515 ccccactcttgtaagtgatgagatgctcctctcttttcctaaaacacgtattagctatagtaagatc 15217581  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 397 - 490
Target Start/End: Original strand, 21239700 - 21239793
Alignment:
Q  397 taataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagt 490  Q
    |||||| || || ||||||||||||| | ||||||| | |||| || | |||||||||||| |||||||| ||||||||| |||||| ||||||    
T  21239700 taataaaaaaaatatatatctgagaacatgtcacccaattcttgtaagtgataagatgctcatctctttttctaaaacacatattagctatagt 21239793  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 493
Target Start/End: Complemental strand, 13587721 - 13587653
Alignment:
Q  426 gtcaccccactcttatatgcgataagatgctcctctcttttcct-aaaacacgtattagttatagtaag 493  Q
    |||||||| ||||| || | ||||||||||||||||||||| || |||| | ||||||| |||||||||    
T  13587721 gtcacccctctcttgtaagtgataagatgctcctctctttttctaaaaaaatgtattagctatagtaag 13587653  T

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Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 393 - 496
Target Start/End: Original strand, 49349652 - 49349755
Alignment:
Q  393 ttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaa 492  Q
    |||||||||||||  |||| |||||||||| | |  ||||||||||| || | |||||||||||| ||| ||||||| ||||| ||||||| ||||||||    
T  49349652 ttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgataagatgctcatctattttcctgaaacaagtattagctatagtaa 49349751  T
Q  493 gatc 496  Q
    ||||    
T  49349752 gatc 49349755  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 372 - 496
Target Start/End: Complemental strand, 6080511 - 6080387
Alignment:
Q  372 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 471  Q
    |||| ||||||| |||  || |||||||||||||  |||| ||| |||||| | |  ||| ||||||| || | |||||||||||||||||||||||  |    
T  6080511 aaacaaatcttcctgtcggatttcctaataagaaataaatctatttgagaacatgagacctcactcttgtaagtgataagatgctcctctcttttcccga 6080412  T
Q  472 aacacgtattagttatagtaagatc 496  Q
    |||| ||||||| ||||||||||||    
T  6080411 aacaagtattagctatagtaagatc 6080387  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 430 - 496
Target Start/End: Original strand, 20429914 - 20429980
Alignment:
Q  430 ccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 496  Q
    ||||||||||||| | ||| ||||| ||||||||||||||||| |||||||||  ||||||||||||    
T  20429914 ccccactcttataagtgatgagatggtcctctcttttcctaaagcacgtattaactatagtaagatc 20429980  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 431 - 496
Target Start/End: Complemental strand, 440904 - 440839
Alignment:
Q  431 cccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 496  Q
    ||||||||| || | ||| |||||||||||||||||||||||| ||||||||   |||||||||||    
T  440904 cccactcttgtaagtgatgagatgctcctctcttttcctaaaatacgtattaacgatagtaagatc 440839  T

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