View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6488_low_4 (Length: 522)

Name: NF6488_low_4
Description: NF6488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6488_low_4
NF6488_low_4
[»] chr2 (3 HSPs)
chr2 (84-511)||(43851476-43851904)
chr2 (2-68)||(43851986-43852052)
chr2 (142-200)||(41383017-41383075)
[»] chr6 (4 HSPs)
chr6 (142-230)||(7980036-7980124)
chr6 (101-204)||(7972950-7973053)
chr6 (101-204)||(8040988-8041091)
chr6 (101-204)||(8031620-8031723)
[»] chr7 (1 HSPs)
chr7 (101-242)||(14199116-14199257)
[»] chr3 (2 HSPs)
chr3 (128-244)||(38827942-38828058)
chr3 (141-197)||(361786-361842)
[»] scaffold0531 (1 HSPs)
scaffold0531 (142-204)||(3984-4046)
[»] chr8 (1 HSPs)
chr8 (151-239)||(34408878-34408966)


Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 84 - 511
Target Start/End: Complemental strand, 43851904 - 43851476
Alignment:
Q  84 atatatagtattagtagtataccatccaagacttgccatggcagatggaagactcaagacaccagctccaaccatggcagtaacattgtgaaaagctgcg 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43851904 atatatagtattagtagtataccatccaagacttgccatggcagatggaagactcaagacaccagctccaaccatggcagtaacattgtgaaaagctgcg 43851805  T
Q  184 taccaccattttgcattccttgaagaagttatgggaagccaatcatctattgccttttgttcagctgttcttttatctatctgtt-nnnnnnnnngtaca 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||    
T  43851804 taccaccattttgcattccttgaagaagttatgggaagccaatcatctattgccttttgttcagctgttcttttatctatctgttaaaaaaaaaagtaca 43851705  T
Q  283 caatatatcagaactagatttttatttatttttcatacaaataaatacaagacataataacaagtgttctcaactggttcttgtgctgagaaagagacct 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43851704 caatatatcagaactagatttttatttatttttcatacaaataaatacaagacataataacaagtgttctcaactggttcttgtgctgagaaagagacct 43851605  T
Q  383 tttcagcctctgaagaagcaattggnnnnnnnnnnnnnggagactcagttcccatggtggttattaagacaagtatgtgtgtagtttaannnnnnnggaa 482  Q
    |||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  43851604 tttcagcctctgaagaagcaattggtttttcattttttggagactcagttcccatggtggttattaagacaagtatgtgtgtagtttaatttttttggaa 43851505  T
Q  483 caaagaggagaaagatataatgaaatgtt 511  Q
    ||||||||||||| |||||||||||||||    
T  43851504 caaagaggagaaatatataatgaaatgtt 43851476  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 43852052 - 43851986
Alignment:
Q  2 actcatgtgattttgtaataagtgaataggttaaacggtaacctaatcggtgttggtttgtgaaaaa 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43852052 actcatgtgattttgtaataagtgaataggttaaacggtaacctaatcggtgttggtttgtgaaaaa 43851986  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 41383017 - 41383075
Alignment:
Q  142 acaccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcatt 200  Q
    ||||||||||||||||||||||| |||||||| ||||  | ||||||||||||||||||    
T  41383017 acaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatt 41383075  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 7980036 - 7980124
Alignment:
Q  142 acaccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcattccttgaagaagttatgggaagccaatcatc 230  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||  ||| || || |||||||| |||||    
T  7980036 acaccagctccaaccatggcagtgacattgtgaaaagctgagtaccaccattttgcattccttttagatgtaattggaagccactcatc 7980124  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 7972950 - 7973053
Alignment:
Q  101 tataccatccaagacttgccatggcagatggaagactcaaga-caccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcat 199  Q
    ||||||||||||||  |||||||||| | || |||| ||||| |||||||||||||||||||||| |||||||| ||||  | |||||||||||||||||    
T  7972950 tataccatccaagagctgccatggcaaaggggagac-caagaacaccagctccaaccatggcagtgacattgtggaaagtcgagtaccaccattttgcat 7973048  T
Q  200 tcctt 204  Q
    |||||    
T  7973049 tcctt 7973053  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 8041091 - 8040988
Alignment:
Q  101 tataccatccaagacttgccatggcagatggaagactcaaga-caccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcat 199  Q
    ||||||||||||||  |||||||| | | || |||| ||||| |||||||||||||||||||||| |||||||| ||||  | |||||||||||||||||    
T  8041091 tataccatccaagagctgccatggaaaaggggagac-caagaacaccagctccaaccatggcagtgacattgtggaaagtcgagtaccaccattttgcat 8040993  T
Q  200 tcctt 204  Q
    |||||    
T  8040992 tcctt 8040988  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 8031723 - 8031620
Alignment:
Q  101 tataccatccaagacttgccatggcagatggaagactcaaga-caccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcat 199  Q
    ||||||||||||||  |||||||| | | || |||| ||||| |||||||||||||||| ||||| |||||||| ||||  |  ||||||||||||||||    
T  8031723 tataccatccaagatatgccatggaaaaggggagac-caagaacaccagctccaaccattgcagtgacattgtggaaagaagaataccaccattttgcat 8031625  T
Q  200 tcctt 204  Q
    |||||    
T  8031624 tcctt 8031620  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 242
Target Start/End: Original strand, 14199116 - 14199257
Alignment:
Q  101 tataccatccaagacttgccatggcagatggaagactcaagacaccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcatt 200  Q
    |||||||||||||    ||||||||| | || ||||| |  |||||||||||||||||||||||||||||||| || || |  |||||||||||||||||    
T  14199116 tataccatccaagttgagccatggcataagggagactaagaacaccagctccaaccatggcagtaacattgtggaatgcagaataccaccattttgcatt 14199215  T
Q  201 ccttgaagaagttatgggaagccaatcatctattgccttttg 242  Q
     ||||| ||| | || |||||||| ||||| ||||| |||||    
T  14199216 tcttgacgaactaattggaagccagtcatcaattgctttttg 14199257  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 38827942 - 38828058
Alignment:
Q  128 atggaagactcaagacaccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcattccttgaagaagttatgggaagccaatc 227  Q
    |||||||||| |  |||||||| ||||||||||| || | |||||| || || |  ||||||||||| ||||| || |||| |||||  |||||||||||    
T  38827942 atggaagactgagaacaccagcaccaaccatggctgttagattgtggaacgccgaataccaccatttggcatttctagaagcagttacaggaagccaatc 38828041  T
Q  228 atctattgccttttgtt 244  Q
    ||| || ||||||||||    
T  38828042 atcaatggccttttgtt 38828058  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 361786 - 361842
Alignment:
Q  141 gacaccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgc 197  Q
    ||||||||| |||||||| ||||| ||||| ||||||| ||  ||||||||||||||    
T  361786 gacaccagcaccaaccatagcagtcacattatgaaaagttgaataccaccattttgc 361842  T

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Target: scaffold0531 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 3984 - 4046
Alignment:
Q  142 acaccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcattcctt 204  Q
    ||||||||||||||||| ||||| |||||||| ||||  |  |||||||||||||||||||||    
T  3984 acaccagctccaaccattgcagtgacattgtggaaagaagaataccaccattttgcattcctt 4046  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 34408966 - 34408878
Alignment:
Q  151 ccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcattccttgaagaagttatgggaagccaatcatctattgcctt 239  Q
    ||||||||||| || | |||||||||||| | |||||||||||| || ||||| || | ||| | ||||||||||||||| || |||||    
T  34408966 ccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcctcgaggcagtgacgggaagccaatcatcgatggcctt 34408878  T

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