View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6490_low_2 (Length: 507)
Name: NF6490_low_2
Description: NF6490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6490_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 12 - 491
Target Start/End: Original strand, 43614401 - 43614880
Alignment:
| Q |
12 |
agagagcataaagagcagcaagaattaactgagatgaacctgttccaacaacaacgtgtcgaccttgtgttactgcatttccaaccacattatgtaacct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43614401 |
agagagcataaagagcagcaagaattaactgagatgaacctgttccaacaacaacgtgtcgaccttgtgttactgcatttccaaccacattatgtaacct |
43614500 |
T |
|
| Q |
112 |
cactacttcctttgaaagttctggctcaagaaaccaacaaatgcttgttggatcagaaaaataactcatagattgccatcctggtattattattgtggtc |
211 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43614501 |
cactacttcctttgaaaattctggctcaagaaaccaacaaatgcttgttggatcagaaaaataactcatagattgccatcctggtattattattgtggtc |
43614600 |
T |
|
| Q |
212 |
ttgtctcccatttgtcgccaataacgttcgtacattgttgggtcgccactgaaaaattattaatttattattattagttttcaaagtcaatttcatttca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43614601 |
ttgtctcccatttgtcgccaataacgttcgtacattgttgggtcgccactgaaaagttattaatttattattattagttttcaaagtcaatttcatttca |
43614700 |
T |
|
| Q |
312 |
tatacagtttcttattcaactcaatgtcagaattgtagtgaactcattaattatttccaacaaaactcttatttaaaaattttaatttcatgattggaaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43614701 |
tatacagtttcttattcaactcaatgtcagaattgtagtgaactcattaattatttccaacaaaactcttatttaaaaattttaatttcatgattggaaa |
43614800 |
T |
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| Q |
412 |
agaaaagtgtacttgaatcatgtgctaccaacattcactctatatttttaacactcactctttaccgaataaaattcatg |
491 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43614801 |
agaaaagtatacttgaatcatgtgctaccaacattcactctatatttttaacactcactcttaaccgaataaaattcatg |
43614880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 34688223 - 34688427
Alignment:
| Q |
12 |
agagagcataaagagcagcaagaattaactgagatgaacctgttccaacaacaacgtgtcgaccttgtgttactgcatttccaaccacattatgtaacct |
111 |
Q |
| |
|
|||||||||| || |||||||||| | ||||| |||||||| || ||||||| ||| || |||| ||| |||||||| || ||||| | || ||||| |
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| T |
34688223 |
agagagcatagagtgcagcaagaaaaagttgagaggaacctgtccctacaacaatgtgacgtccttctgtgactgcattcccgaccactctgtgcaacct |
34688322 |
T |
|
| Q |
112 |
cactacttcctttgaaagttctggctcaagaaaccaacaaatgcttgttggatcagaaaaataactcatagattgccatcctggtattattattgtggtc |
211 |
Q |
| |
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|||||| ||||||| || |||| ||||||||||||||| ||| | | ||| |||||||| ||||| |||||||||||||||||||| || ||| || |
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| T |
34688323 |
cactacctcctttgcaaactctgcctcaagaaaccaacatatgttcgacacatccgaaaaatagctcatggattgccatcctggtattatgatcgtgctc |
34688422 |
T |
|
| Q |
212 |
ttgtc |
216 |
Q |
| |
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||||| |
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|
| T |
34688423 |
ttgtc |
34688427 |
T |
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