View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6490_low_6 (Length: 311)

Name: NF6490_low_6
Description: NF6490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6490_low_6
NF6490_low_6
[»] chr5 (4 HSPs)
chr5 (14-311)||(37705156-37705453)
chr5 (53-255)||(37437914-37438116)
chr5 (55-162)||(37700646-37700753)
chr5 (257-303)||(1629683-1629729)
[»] chr4 (1 HSPs)
chr4 (63-236)||(16840622-16840796)
[»] chr2 (2 HSPs)
chr2 (171-238)||(8265959-8266027)
chr2 (259-304)||(45385838-45385883)
[»] scaffold0591 (1 HSPs)
scaffold0591 (257-311)||(3949-4003)
[»] chr7 (3 HSPs)
chr7 (259-311)||(41331387-41331439)
chr7 (171-206)||(21595127-21595162)
chr7 (257-307)||(32804686-32804736)
[»] chr1 (1 HSPs)
chr1 (171-237)||(2125101-2125168)
[»] chr3 (1 HSPs)
chr3 (259-303)||(33291632-33291676)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 311
Target Start/End: Complemental strand, 37705453 - 37705156
Alignment:
Q  14 atcaagtcacccacttagtcgtaaatataagaaatgtggtccatgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtatcgatat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  37705453 atcaagtcacccacttagtcgtaaatataagaaatgtggtccatgatgaaccaattataaaggtggtctaccgtagaacccacgagttgagtatcgatat 37705354  T
Q  114 ccgatgacatctgatactttttctttttatatgctcaatgcattttcttttgtgctgtaacaaactttgaaaaaattataaatttaaagaaatttttgta 213  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37705353 ccgatggcatctgatactttttctttttatatgctcaatgcattttcttttgtgctgtaacaaactttgaagaaattataaatttaaagaaatttttgta 37705254  T
Q  214 gtttagttaagaaccatacaaaaaacacgtacataaaataaatgttaaattacaccataagtcttttaagttatttagttgtaagaaattgatcattt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37705253 gtttagttaagaaccatacaaaaaacacgtacataaaataaatgttaaattacaccataagtcttttaagttatttagttgtaagaaattggtcattt 37705156  T

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Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 53 - 255
Target Start/End: Complemental strand, 37438116 - 37437914
Alignment:
Q  53 tccatgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtatcgatatccgatgacatctgatactttttctttttatatgctcaat 152  Q
    |||||||||||||  ||||||||||||| ||| ||||||||||  |||||||||||||||||  ||||||  | |||||||||||||||||||||||| |    
T  37438116 tccatgatgaaccgcttataaaggtggtttacagtagaactcaatagtagagtatcgatatcatatgacacttaatactttttctttttatatgctcagt 37438017  T
Q  153 gcattttcttttgtgctgtaacaaactttgaaaaaattataaatttaaagaaatttttgtagtttagttaagaaccatacaaaaaacacgtacataaaat 252  Q
    |||||||||| |||||| ||| || ||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||| |   |||||||||    
T  37438016 gcattttcttatgtgctataataagctttgaggaaattataaatttaaagaaatttttgtagtttagttaagaaccatagaaaaaaaaaacacataaaat 37437917  T
Q  253 aaa 255  Q
    |||    
T  37437916 aaa 37437914  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 37700753 - 37700646
Alignment:
Q  55 catgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtatcgatatccgatgacatctgatactttttctttttatatgctcaatgc 154  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||  | |||  |||||||||||| |||||| |||    
T  37700753 catgatgaaccacttataaaagtggtctacggtagaactcacgagtagagtatcaatatccgatgacacttaatatgttttctttttatgtgctcagtgc 37700654  T
Q  155 attttctt 162  Q
    ||||||||    
T  37700653 attttctt 37700646  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 1629683 - 1629729
Alignment:
Q  257 gttaaattacaccataagtcttttaagttatttagttgtaagaaatt 303  Q
    |||||||||||||| ||||| ||||||||||||| |||||| |||||    
T  1629683 gttaaattacaccaaaagtcctttaagttatttaattgtaataaatt 1629729  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 16840622 - 16840796
Alignment:
Q  63 accaattataaaggtggtctaccgtagaactcacgagtagagtatcga-tatccgatgacatctgatactttttctttttatatgctcaatgcattttct 161  Q
    |||| ||||||| ||||| |||  |||||||||||||||||||||| | ||||  ||||||  | |||||||||||||||||||||| | | ||||||||    
T  16840622 accacttataaaagtggtttactttagaactcacgagtagagtatcaaatatcttatgacacttaatactttttctttttatatgcttagtacattttct 16840721  T
Q  162 tttgtgctgtaacaaactttgaaaaaattataaatttaaagaaatttttgtagtttagttaagaaccatacaaaa 236  Q
    | | || | |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| ||| ||||    
T  16840722 tatttgttataacaaactttgaataaattatagatttaaagaaatttttgtagtttagttaaaaactataaaaaa 16840796  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 8265959 - 8266027
Alignment:
Q  171 taacaaactttgaaaaaattataaatttaaagaaatt-tttgtagtttagttaagaaccatacaaaaaa 238  Q
    ||||||| ||||| ||||||||||||||||||||||| | ||||||| ||||||||| ||||| |||||    
T  8265959 taacaaaatttgagaaaattataaatttaaagaaattgtatgtagttaagttaagaatcatacgaaaaa 8266027  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 45385838 - 45385883
Alignment:
Q  259 taaattacaccataagtcttttaagttatttagttgtaagaaattg 304  Q
    |||||||||||||| ||| ||||||||||||| |||||| ||||||    
T  45385838 taaattacaccataggtcctttaagttatttaattgtaacaaattg 45385883  T

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Target: scaffold0591 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 4003 - 3949
Alignment:
Q  257 gttaaattacaccataagtcttttaagttatttagttgtaagaaattgatcattt 311  Q
    |||||||||||||| ||||| |||| |||||||| |||||| |||||||||||||    
T  4003 gttaaattacaccagaagtcatttatgttatttaattgtaataaattgatcattt 3949  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 41331439 - 41331387
Alignment:
Q  259 taaattacaccataagtcttttaagttatttagttgtaagaaattgatcattt 311  Q
    ||||||| | |||||||| ||||||||||||| |||||| |||||||||||||    
T  41331439 taaattatatcataagtcatttaagttatttaattgtaataaattgatcattt 41331387  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 21595127 - 21595162
Alignment:
Q  171 taacaaactttgaaaaaattataaatttaaagaaat 206  Q
    |||||||||||||||||||||| |||||||||||||    
T  21595127 taacaaactttgaaaaaattatgaatttaaagaaat 21595162  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 32804736 - 32804686
Alignment:
Q  257 gttaaattacaccataagtcttttaagttatttagttgtaagaaattgatc 307  Q
    |||||||||||||| |||||||||| | |||||| |||||| |||||||||    
T  32804736 gttaaattacaccacaagtcttttaggatatttaattgtaataaattgatc 32804686  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 2125168 - 2125101
Alignment:
Q  171 taacaaactttgaaaaaattataaatttaaagaaatttttgt-agtttagttaagaaccatacaaaaa 237  Q
    ||||||||||||| ||||||||||||||||| ||||  | || | |||||||||||||||||| ||||    
T  2125168 taacaaactttgagaaaattataaatttaaaaaaatcatggtgaatttagttaagaaccatacgaaaa 2125101  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 33291676 - 33291632
Alignment:
Q  259 taaattacaccataagtcttttaagttatttagttgtaagaaatt 303  Q
    ||||||||| |||||||| ||||||||||||| |||||| |||||    
T  33291676 taaattacaacataagtcctttaagttatttaattgtaacaaatt 33291632  T

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