View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6490_low_9 (Length: 254)

Name: NF6490_low_9
Description: NF6490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6490_low_9
NF6490_low_9
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-243)||(29891-30133)
[»] chr2 (3 HSPs)
chr2 (1-243)||(26397606-26397848)
chr2 (1-234)||(26459868-26460101)
chr2 (1-241)||(25830163-25830403)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-243)||(277001-277243)
[»] chr1 (3 HSPs)
chr1 (19-236)||(845527-845744)
chr1 (116-241)||(30400042-30400167)
chr1 (116-241)||(30406599-30406724)
[»] chr7 (1 HSPs)
chr7 (1-234)||(6965478-6965710)
[»] chr6 (1 HSPs)
chr6 (1-234)||(26013973-26014206)
[»] chr4 (3 HSPs)
chr4 (1-234)||(56108206-56108439)
chr4 (1-176)||(20646349-20646524)
chr4 (200-236)||(20646531-20646567)
[»] chr3 (1 HSPs)
chr3 (1-241)||(33002186-33002425)
[»] chr5 (1 HSPs)
chr5 (138-234)||(13863685-13863782)


Alignment Details
Target: scaffold0182 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 29891 - 30133
Alignment:
Q  1 tcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29891 tcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattca 29990  T
Q  101 aacgacggtccttacctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagatttcgct 200  Q
    ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29991 aacaacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgct 30090  T
Q  201 tgttctcactccaacatgttgcaaagtttcaatacaattctgt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30091 tgttctcactccaacatgttgcaaagtttcaatacaattctgt 30133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 26397606 - 26397848
Alignment:
Q  1 tcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  26397606 tcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactacagcattgcctttgcatctcctgattctaaattca 26397705  T
Q  101 aacgacggtccttacctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagatttcgct 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  26397706 aacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcttccgtgttgtttggccattgtggcaaagattttgct 26397805  T
Q  201 tgttctcactccaacatgttgcaaagtttcaatacaattctgt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26397806 tgttctcactccaacatgttgcaaagtttcaatacaattctgt 26397848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 26460101 - 26459868
Alignment:
Q  1 tcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattca 100  Q
    |||||||||||||| |  |||||||||||||||| ||||| || ||||||| || || || | |||| |||||||||||||||||||||||| ||| |||    
T  26460101 tcatcatccaaatccatcgcataaaagaatcttggattttgtttttgcataagcgtacaacattccaacattgcatttgcatctcctgattccaaagtca 26460002  T
Q  101 aacgacggtccttacctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagatttcgct 200  Q
    ||||||| |||||| |||||  |||| ||| |||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||| | || |||    
T  26460001 aacgacgatccttatctaaaagatttttaatatctttctccaagcaaccaactttctcataccctccgtgttgtttcgcaagtgtggcaaaaaatttgct 26459902  T
Q  201 tgttctcactccaacatgttgcaaagtttcaata 234  Q
    || | |||| ||||||||||||||||||||||||    
T  26459901 tggtttcacaccaacatgttgcaaagtttcaata 26459868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 25830163 - 25830403
Alignment:
Q  1 tcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattca 100  Q
    |||||||||||||||| ||||||||| ||||| | |||||||||||||||| |||||||| |||||| |||||   |||| ||||| || |||||   ||    
T  25830163 tcatcatccaaatcaattgcataaaaaaatctaggattttcttcttgcataagcataaaacactccaacattgttgttgcttctcccgactctaatgcca 25830262  T
Q  101 aacgacggtccttacctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagatttcgct 200  Q
    |||||||    ||| |||||| ||||||||  |||||||||||||| | ||  || ||||| ||||| |||||||||||||||||||| || |||||| |    
T  25830263 aacgacgacttttatctaaatgatttctaatgtctttctccaagcagctaatgttttcataccctccatgttgtttggccattgtggcgaaaatttcggt 25830362  T
Q  201 tgttctcactccaacatgttgcaaagtttcaatacaattct 241  Q
    |||| |||| ||||||||||| |||||||||||||| ||||    
T  25830363 tgttttcaccccaacatgttgtaaagtttcaatacagttct 25830403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 277001 - 277243
Alignment:
Q  1 tcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  277001 tcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgtataaaatacttcagcattgcctttgcatctcctgattctaaattca 277100  T
Q  101 aacgacggtccttacctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagatttcgct 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  277101 aacgacggtccttatctaaataatttctaacatctttctccaagcaaccaactttctcatatcttccgtgttgtttggccattgtggcaaagattttgct 277200  T
Q  201 tgttctcactccaacatgttgcaaagtttcaatacaattctgt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  277201 tgttctcactccaacatgttgcaaagtttcaatacaattctgt 277243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 845527 - 845744
Alignment:
Q  19 gcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttaccta 118  Q
    |||||||||||||||||||||| |||||||||| || ||||| |||||| |||||||||||||||||||||||  ||| |||||||||| |||||| |||    
T  845527 gcataaaagaatcttgaattttgttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgatttcaaagtcaaacgacgatccttatcta 845626  T
Q  119 aataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagatttcgcttgttctcactccaacatg 218  Q
    ||  |||| ||| |||||| ||| ||||||||||||||||||| |||||||||||||| || | ||||||||| |||| ||||| |||||| |||| |||    
T  845627 aaagatttataatatctttttccgagcaaccaactttctcataccctccgtgttgtttcgcaagtgtggcaaaaattttgcttggtctcacaccaatatg 845726  T
Q  219 ttgcaaagtttcaataca 236  Q
    ||||||||||||||||||    
T  845727 ttgcaaagtttcaataca 845744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 30400167 - 30400042
Alignment:
Q  116 ctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagatttcgcttgttctcactccaac 215  Q
    |||||| ||||||||  |||||||||||||||||||  || ||||||| ||| |||||||||| |  | || |  | |||| | ||||| |||| |||||    
T  30400167 ctaaatgatttctaatgtctttctccaagcaaccaatgttttcatatcatccatgttgtttggtcgctatgacgtaaattttggttgttttcaccccaac 30400068  T
Q  216 atgttgcaaagtttcaatacaattct 241  Q
    ||||||||||||||||||||||||||    
T  30400067 atgttgcaaagtttcaatacaattct 30400042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 30406724 - 30406599
Alignment:
Q  116 ctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagatttcgcttgttctcactccaac 215  Q
    |||||| ||||||||  |||||||||||||||||||  || ||||||| ||| |||||||||| |  | || |  | |||| | ||||| |||| |||||    
T  30406724 ctaaatgatttctaatgtctttctccaagcaaccaatgttttcatatcatccatgttgtttggtcgctatgacgtaaattttggttgttttcaccccaac 30406625  T
Q  216 atgttgcaaagtttcaatacaattct 241  Q
    ||||||||||||||||||||||||||    
T  30406624 atgttgcaaagtttcaatacaattct 30406599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 6965710 - 6965478
Alignment:
Q  1 tcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattca 100  Q
    |||||||||| ||||| |||||||||||||| || |||||||||||||||  |||||||| | |||| ||||||||||||||||||||||||||||  ||    
T  6965710 tcatcatccatatcaattgcataaaagaatcctggattttcttcttgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaagcca 6965611  T
Q  101 aacgacggtccttacctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagatttcgct 200  Q
    |||| ||  | ||| ||||||  ||||| |||||||||||||||||||||| | | ||||||||||| | || |||||||||||||||||| | || |||    
T  6965610 aacgccgacctttatctaaatggtttcttacatctttctccaagcaaccaa-tgtttcatatcctccatattctttggccattgtggcaaaaaatttgct 6965512  T
Q  201 tgttctcactccaacatgttgcaaagtttcaata 234  Q
    |||||||||||||||||| |||||||||||||||    
T  6965511 tgttctcactccaacatggtgcaaagtttcaata 6965478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 26014206 - 26013973
Alignment:
Q  1 tcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattca 100  Q
    |||||||||| ||||| |||||||||||||| || | |||||||||||||  |||||||| | |||| |||||||||||||||||| |||||||||  ||    
T  26014206 tcatcatccatatcaattgcataaaagaatcctggactttcttcttgcatgagcataaaacaatccaacattgcatttgcatctccagattctaaagcca 26014107  T
Q  101 aacgacggtccttacctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagatttcgct 200  Q
    |||| ||  | ||| ||||||  ||||| ||||||||||||||||||||||  || ||||||||||| | || |||||||||||||||||| | || |||    
T  26014106 aacgccgacctttatctaaatggtttcttacatctttctccaagcaaccaatgttttcatatcctccatattctttggccattgtggcaaaaaatttgct 26014007  T
Q  201 tgttctcactccaacatgttgcaaagtttcaata 234  Q
    |||||||||||||||||| |||||||||||||||    
T  26014006 tgttctcactccaacatggtgcaaagtttcaata 26013973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 56108439 - 56108206
Alignment:
Q  1 tcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattca 100  Q
    |||||||||| ||||| |||||||||||||| || | |||||||||||||  |||||||| | || | |||||||||||||||||| |||||||||  ||    
T  56108439 tcatcatccatatcaattgcataaaagaatcctggactttcttcttgcatgagcataaaacaatctaacattgcatttgcatctccagattctaaagcca 56108340  T
Q  101 aacgacggtccttacctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagatttcgct 200  Q
    |||| ||  | ||| ||||||  ||||| ||||||||||||||||||||||  || ||||||||||| | || |||||||||||||||||| |||| |||    
T  56108339 aacgccgacctttatctaaatggtttcttacatctttctccaagcaaccaatgttttcatatcctccatattctttggccattgtggcaaaaattttgct 56108240  T
Q  201 tgttctcactccaacatgttgcaaagtttcaata 234  Q
    |||||||||||||||||| |||||||||||||||    
T  56108239 tgttctcactccaacatggtgcaaagtttcaata 56108206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 20646349 - 20646524
Alignment:
Q  1 tcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattca 100  Q
    |||||||||||||| |  |||||||||||||||||||||| |||||||||| || ||||| |||||| |||||||||||||||||||||||| ||| |||    
T  20646349 tcatcatccaaatccatcgcataaaagaatcttgaatttttttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgattccaaagtca 20646448  T
Q  101 aacgacggtccttacctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgttt 176  Q
    ||||| | |||||| |||||  |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  20646449 aacgatgatccttatctaaaagatttctaatatctttctccgagcaaccaactttctcatatcctccgtgttgttt 20646524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 20646531 - 20646567
Alignment:
Q  200 ttgttctcactccaacatgttgcaaagtttcaataca 236  Q
    ||| |||||| ||||||||||||||||||||||||||    
T  20646531 ttggtctcacaccaacatgttgcaaagtttcaataca 20646567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 33002425 - 33002186
Alignment:
Q  1 tcatcatccaaatcaaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattca 100  Q
    |||||||||||||||| ||||||||| ||||| | |||||||||||||||| |||||||| |||||| |||||   |||||||||| || |||||   ||    
T  33002425 tcatcatccaaatcaattgcataaaa-aatctaggattttcttcttgcataagcataaaacactccaacattgttgttgcatctcccgactctaatgcca 33002327  T
Q  101 aacgacggtccttacctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagatttcgct 200  Q
    |||||||    ||| |||||| ||||||||  |||||||||||||| ||||  || ||||| ||||| |||||||||||||||||||| || |||| | |    
T  33002326 aacgacgacttttatctaaatgatttctaatgtctttctccaagcatccaatgttttcataccctccatgttgtttggccattgtggcgaaaattttggt 33002227  T
Q  201 tgttctcactccaacatgttgcaaagtttcaatacaattct 241  Q
    |||| |||| ||||||||||| |||||||||||||| ||||    
T  33002226 tgttttcaccccaacatgttgtaaagtttcaatacagttct 33002186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 13863782 - 13863685
Alignment:
Q  138 ctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagatttcgcttgttctcactcc-aacatgttgcaaagtttcaata 234  Q
    ||||||||||||||  || ||||||| | | | || |||||||||||||||||| | || ||||||||||||||| |||||| |||||||||||||||    
T  13863782 ctccaagcaaccaatgttttcatatctttcatattctttggccattgtggcaaaaaatttgcttgttctcactccaaacatggtgcaaagtttcaata 13863685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University