View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6491_high_12 (Length: 232)
Name: NF6491_high_12
Description: NF6491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6491_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 37755779 - 37755862
Alignment:
| Q |
16 |
tataaagagtcaagcttctttgtttggccacaccataactcatgaaaacaagaagcatacaataaatctcatatttcctataaa |
99 |
Q |
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| T |
37755779 |
tataaagagtcaagcttctttgtttggccacaccagaactcatgaaaacaagaagcatacaataaatctcgtatttcctataaa |
37755862 |
T |
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Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 37755865 - 37755946
Alignment:
| Q |
134 |
ttgtatccacttttagtgtgctcttgtaaaatgtatccactttgtttccagctataatttcttttttgaagaagctaaatta |
215 |
Q |
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| T |
37755865 |
ttgtatccacttttagcgtgctcttgtaaaatgtatccactttgtttccagctataattttttttttgaagaagctaaatta |
37755946 |
T |
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