View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6491_high_2 (Length: 649)
Name: NF6491_high_2
Description: NF6491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6491_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 302 - 631
Target Start/End: Complemental strand, 46836166 - 46835837
Alignment:
| Q |
302 |
ttgtcaagaaaaaacacttttattttaattgtgtttgatcttaagtattggttaaatatgttcaattgttcaggattgcaatccatttacttgggtacaa |
401 |
Q |
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| T |
46836166 |
ttgtcaagaaaaaacacttttattttaattgtgtttgatcttaagtattggttaaatatgttcaattgttcaggattgcaatccatttacttgggtaaaa |
46836067 |
T |
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| Q |
402 |
gggaaactaatgaaaatgagagtgagaacatttctttgaggtcgtatatagctccaagagattgaaaggaagataagttggaaagatctctagcttccct |
501 |
Q |
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| T |
46836066 |
gggaaactaatgaaaatgagagtgagaacatttctttgaggtcgtatatagctccaagagattgaaaggaagataagttggaaagatctctagcttccct |
46835967 |
T |
|
| Q |
502 |
gaaaatagcaacggatcaacaaggaaggaaaattgaggtttatagacatcttccctgatgccaaaattgggaagaggatcttaaatctctaaatgacaaa |
601 |
Q |
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| T |
46835966 |
gaaaatagcaacggatcaacaaggaaggaaaattgaggtttatagacatcttccctgatgccaaaattgggaagaggatcttaaatctctaaatgacaaa |
46835867 |
T |
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| Q |
602 |
attcatcatgaacaagtaacctcagaggtg |
631 |
Q |
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| T |
46835866 |
attcatcatgaacaagtaacctcagaggtg |
46835837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 46836383 - 46836297
Alignment:
| Q |
85 |
cactatcatcaagtagttatagtatatttgtcaaagtgacaaaacttacatctgcttatttaacctggtatgatattatccactggg |
171 |
Q |
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| T |
46836383 |
cactatcatcaagtagttatagtatatttgtcaaagtgacaaaacttacatctgcttatttaacctggtatgctattatccactggg |
46836297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 46836463 - 46836433
Alignment:
| Q |
1 |
cgtgcactctcccatatccacgtactgtgga |
31 |
Q |
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| T |
46836463 |
cgtgcactctcccatatccacgtactgtgga |
46836433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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