View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6491_high_4 (Length: 396)
Name: NF6491_high_4
Description: NF6491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6491_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 382
Target Start/End: Original strand, 44851472 - 44851838
Alignment:
| Q |
8 |
ggacatcatcatagaccaagaagatcctttcaaactaaatatagaaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctat |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44851472 |
ggacatcattatagaccaagaagatcctttcaaactaaatatagaaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctat |
44851571 |
T |
|
| Q |
108 |
gcacagttaaagaatatgtcagcatctaaatcagaagaatttgattttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44851572 |
gcacagttaaagaatatgtcagcatctaaatcagaagaatttgattttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacga |
44851671 |
T |
|
| Q |
208 |
ggagcattttttctgatgaaaggattcctgttgccccttcttgattgattcaagtgnnnnnnnnatgtgtctgttgtctagaagaatgtaacaaaatgta |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44851672 |
ggagcattttttctgatgaaaggattcctgttgccccttcttgattgatt--------ttttttatgtgtctgttgtctagaagaatgtaacaaaatgta |
44851763 |
T |
|
| Q |
308 |
ttgttcatatatcgcatgctacaaacatcccacatatcaatttcaggtagtttttaaatttggcatctttctatt |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44851764 |
ttgttcatatatcgcatgctacaaacatcccacatatcaatttcaggtagtttttaaatttggcatctttctatt |
44851838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University