View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6491_high_8 (Length: 258)
Name: NF6491_high_8
Description: NF6491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6491_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 32005581 - 32005821
Alignment:
| Q |
14 |
tactccacgatctcaaattatttgattttgactcttgaatgagaaaggatcgatgtggacatgcataataaaaatttaaaactacatagcagccccaaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32005581 |
tactccacgatctcaaattatttgattttgactcttgaatgagaaaggatcgatgtggacgtgcataataaaaatttaaaactacatagcagccccaaaa |
32005680 |
T |
|
| Q |
114 |
agtaattttcaccaaatatttaaatattattatatagaataaactagccagtaattattaattaaaaacactgtgaaagtgaagaatcgtaatgcccact |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32005681 |
agtaattttcaccaaatatttaaatattattatatataataaactagccagtaattactaattaaaaacactgtgaaagtgaagaatcgtaatgcccact |
32005780 |
T |
|
| Q |
214 |
aacaaataatggagactaatccaatccaataacctatagtt |
254 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32005781 |
aacaaatggtggagactaatccaatccaataacctatagtt |
32005821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University