View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6491_low_1 (Length: 701)
Name: NF6491_low_1
Description: NF6491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6491_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 35 - 685
Target Start/End: Complemental strand, 9486658 - 9486006
Alignment:
| Q |
35 |
taaaaggtcataatacaagggttatgctaacataatgccaatttgattcaagctattgcttgtgccgcaaattagctnnnnnnnn--tccaacgacagaa |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
9486658 |
taaaaggtcataatacaagggttatgctaacataatgccaatttgattcaagctattgcttgtgccgcaaattagctaaaaaaaaaatccaacgagagaa |
9486559 |
T |
|
| Q |
133 |
aaattccaaggtgcttattcttgaatttacatttattttcctctaatgacactaatgggattttaattcagaatatgatttaatatttatctttttaaca |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9486558 |
aaattccaaggtgcttattcttgaatttacatttattttcctctaacgacactaatgggattttaattcagaatatgatttaatatttgtctttttaaca |
9486459 |
T |
|
| Q |
233 |
ctagctcaaatttaagaagttcaaatcattctacttcagaatatcaagattatatgacataacttattttagcttatatgttataagattaatctcatga |
332 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9486458 |
ctagctcaaattcaagaagttcaaatcattctacttcagaatatcaaaattatatgacatgacttattttagcttatatgttataagattaatctcatga |
9486359 |
T |
|
| Q |
333 |
aaataactcatcagaatctgggatttctatctaaaggaactcaccagaatcacttttgtccacttttaatttagcttaagcttcaattaagctcttgtca |
432 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9486358 |
aaataactcaccagaatctgggatttctatctaaaggaactcaccaaaatcacttttgtccacttttaatttagcttaagcttcaattaagctcttgtca |
9486259 |
T |
|
| Q |
433 |
gctttataatcacttttccagaaacattttatttcggcttaattgcttatgctcctaacttttgcatttaaacttcaaaccaaactcttgttcagccatt |
532 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9486258 |
gctttataatcactttttcagaaacattttatttcggcttaattgcttatgctcttaacttttgcatttaaacttcaaaccaaactcttgttcagccatt |
9486159 |
T |
|
| Q |
533 |
taagcatacataaccagttatgaaccattcaaattcaacttaaacttatattttagcttatgccttaatttccatgtaaaaacccgtaaacagtttttcc |
632 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
9486158 |
taagcatgcataaccagttatgaaccattcaaattcaacttaaacttatattttagcttatgccttaatttccatgtaaaaaaccgtaaacagtttttcc |
9486059 |
T |
|
| Q |
633 |
aacatcaatatccaaacttcaaacgcattttctgtatttgttcttgatccgta |
685 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9486058 |
aacatcaatatccaaacttcaaacgcattttctgtatttgttcctgatccgta |
9486006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 416 - 529
Target Start/End: Original strand, 20112292 - 20112406
Alignment:
| Q |
416 |
caattaagctcttgtcagctttataatcacttttc-cagaaacattttatttcggcttaattgcttatgctcctaacttttgcatttaaacttcaaacca |
514 |
Q |
| |
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||||||||||| || ||||| |||||||||| || | ||||| ||||||||||||| |||||| |||| ||||||||||| ||| |||||||||||| |
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| T |
20112292 |
caattaagctcctgccagctccataatcacttctctccaaaacaacttatttcggcttatttgcttctgcttctaacttttgcctttcaacttcaaacca |
20112391 |
T |
|
| Q |
515 |
aactcttgttcagcc |
529 |
Q |
| |
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||||||| ||||||| |
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|
| T |
20112392 |
aactcttattcagcc |
20112406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 36574877 - 36574936
Alignment:
| Q |
129 |
agaaaaattccaaggtgcttattcttgaatttacatttattttcctctaatgacactaat |
188 |
Q |
| |
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||||||| |||||||||||||||||||||||| |||||||| ||| ||||||||||||| |
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| T |
36574877 |
agaaaaagcccaaggtgcttattcttgaatttaaatttatttccctttaatgacactaat |
36574936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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