View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6491_low_10 (Length: 250)
Name: NF6491_low_10
Description: NF6491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6491_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14774795 - 14774554
Alignment:
| Q |
1 |
tttttacaaagtcaagctacgacattttttatatgtatg--tttcccgagtctgaatgtcaattaggactcttggcaatgttatttgatattttatgact |
98 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14774795 |
tttttacaaagtcaagctacgacattt---atatgtatgcctttcccaaatctgaatgtcaattaggactcttggcaatgttatttgatattttatgact |
14774699 |
T |
|
| Q |
99 |
tttaattgcagtccctggattgaatatccatacaaggatgttgtagaaaggactgcatttggaggactatcacttgatgcatttttgtcagaggtgcaca |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14774698 |
tttaattgcagtccctggattgaatatccatacaaggatgctgtagaaaggaatgcatttggaggactatcacttgatgcatttttgtcagaggtgcaca |
14774599 |
T |
|
| Q |
199 |
tgtctattatctttgt----ctctagtccctcttccttgtatttt |
239 |
Q |
| |
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|||| |||||||||| ||||||||||||||||||||||||| |
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| T |
14774598 |
agtcttttatctttgtctctctctagtccctcttccttgtatttt |
14774554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 15049640 - 15049407
Alignment:
| Q |
1 |
tttttacaaagtcaagctacgacatttttt-atatgtatg--tttcccgagtctgaatgtcaattaggactcttggcaatgttatttgatattttatgac |
97 |
Q |
| |
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||||||| ||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||| | |||| | |||||||||||||||||||||||| |
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| T |
15049640 |
tttttacgaagtccagctatgacatttttttatatgtatgcctttcccgagtctgaatgtcaatttgaactcatagcaatgttatttgatattttatgat |
15049541 |
T |
|
| Q |
98 |
ttttaattgcagtccctggattgaatatccatacaaggatgttgtagaaaggactgcatttggaggactatcacttgatgcatttttgtcagaggtgcac |
197 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| | |||||||| ||||||| | ||||||||||| |||||||||||| |
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| T |
15049540 |
ttttaattgcagtccctggattgaaaatccatacaaggatgctgtaggaaggaatatatttggagaactatcattagatgcatttttatcagaggtgcac |
15049441 |
T |
|
| Q |
198 |
atgtctattatctttgtctctagtccctcttcct |
231 |
Q |
| |
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| |||| |||||||||| |||||||| ||||||| |
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| T |
15049440 |
aagtcttttatctttgtgtctagtccttcttcct |
15049407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 15016831 - 15016626
Alignment:
| Q |
40 |
tttcccgagtctgaatgtcaattaggactcttggcaatgttatttgatatttt-atgacttttaattgcagtccctggattgaatatccatacaaggatg |
138 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||| | | ||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
15016831 |
tttcccgagtctgaatgtcaattaggactcttggcaatgctttttgatatttttaaaatttttaattgcagtccctggattgaaaatccatacaaggatg |
15016732 |
T |
|
| Q |
139 |
ttgtagaaaggactgcatttggaggactatcacttgatgcatttttgtcagaggtgca-----catgtctattatctttgtctctagtccctcttccttg |
233 |
Q |
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||||||||||| ||||| ||||||| | ||||||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||| |
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| T |
15016731 |
ctgtagaaaggaatgcatctggaggattgtcacttgatgcatttttgtcagaggtgcagtgcacaagtcatttatctttgtctctaggccctcttcctta |
15016632 |
T |
|
| Q |
234 |
tatttt |
239 |
Q |
| |
|
|||||| |
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|
| T |
15016631 |
tatttt |
15016626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 80 - 239
Target Start/End: Complemental strand, 17882019 - 17881857
Alignment:
| Q |
80 |
tatttgatattttatgacttttaattgcagtccctggattgaatatccatacaaggatgttgtagaaaggactgcatttggaggactatcacttgatgca |
179 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||| |||| | |||| ||||||||||||||| ||||| |
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| T |
17882019 |
tatttgatattttatgatttttaattgcagtccctggattgaatatccatatgaggatgctgtaaaaagtaaagcatgtggaggactatcactcgatgcg |
17881920 |
T |
|
| Q |
180 |
tttttgtcagaggtgcacatgtctattatctttgtctctagtc---cctcttccttgtatttt |
239 |
Q |
| |
|
||||||||||||||| | | |||| |||||||||||||||||| |||||||||| |||||| |
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|
| T |
17881919 |
tttttgtcagaggtgaataagtcttttatctttgtctctagtcactcctcttccttatatttt |
17881857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 36875041 - 36875206
Alignment:
| Q |
63 |
aggactcttggcaatgttatttgatattttatgacttttaattgcagtccctggattgaatatccatacaaggatgttgtagaaaggactgcatttggag |
162 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | ||| ||||| ||||||||||| | | ||| ||| |||||| ||| ||||| | ||||||||||| |
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| T |
36875041 |
aggacccttggcaatgttatttgatattttacaattttaaattgtagtccctggatcggaaatctatatgaggatgctgttgaaagaaatgcatttggag |
36875140 |
T |
|
| Q |
163 |
gactatcacttgatgcatttttgtcagaggtgcacatgtctattatctttgtctctagtccctctt |
228 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||||||||| |
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|
| T |
36875141 |
gactatcacttgatgcatttttgtctgaggtgcacacatcttctatttttgtctctagtccctctt |
36875206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 53867379 - 53867498
Alignment:
| Q |
76 |
atgttatttgatattttatgacttttaattgcagtccctggattgaatatccatacaaggatgttgtagaaaggactgcatttggaggactatcacttga |
175 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||| ||||| | | ||| ||| |||||| || ||| || |||||| |||||||||||||||| |
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| T |
53867379 |
atgttatttaatattttatgactgttaatttcagtccttggatcggagctccctacgaggatgctgcagatgagagcgcatttagaggactatcacttga |
53867478 |
T |
|
| Q |
176 |
tgcatttttgtcagaggtgc |
195 |
Q |
| |
|
||||||||||||| |||||| |
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|
| T |
53867479 |
tgcatttttgtcaaaggtgc |
53867498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 43528020 - 43528086
Alignment:
| Q |
54 |
atgtcaattaggactcttggcaatgttatttgatattttatgacttttaattgcagtccctggattg |
120 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||||||||||| || |||||||| | |||| ||||||| |
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| T |
43528020 |
atgtcaatgaggactcttgccaatgatatttgatattttaggatttttaatttccgtccttggattg |
43528086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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