View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6491_low_11 (Length: 245)
Name: NF6491_low_11
Description: NF6491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6491_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 47 - 230
Target Start/End: Complemental strand, 14775453 - 14775269
Alignment:
| Q |
47 |
taaagaaggttgtgcgaaaaaa-ttgcctgaaggtgtgaatgagcgaggactttctttggcaggatttatatatcttcatgccctcttcttagaaaaaat |
145 |
Q |
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| T |
14775453 |
taaagaaggttgtgcgaaaaaaattgcctgaaggtgtgaatgagcggggactttctttggcaggatttatatctcttcacgccctcttcttagaaaaaat |
14775354 |
T |
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| Q |
146 |
cccccgtgagaaaacatggaccgtgctcaggaagtttggatataatgatgatatcaagcttactgataatttgattccacctttg |
230 |
Q |
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| T |
14775353 |
gccccgtgagaaaacatggaccgtgctcaggaagtttggatataatgatgatatcaagcttgctgataatttgattccacctttg |
14775269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 47 - 230
Target Start/End: Complemental strand, 17882826 - 17882642
Alignment:
| Q |
47 |
taaagaaggttgtgcgaaaa-aattgcctgaaggtgtgaatgagcgaggactttctttggcaggatttatatatcttcatgccctcttcttagaaaaaat |
145 |
Q |
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| T |
17882826 |
taaagaaggttgtgcaaaaagaattgtctgaaggtgtgaatgaacgaggaattactttgacagggtttctatttcttcatgtccttttcatagaaaaagg |
17882727 |
T |
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| Q |
146 |
cccccgtgagaaaacatggaccgtgctcaggaagtttggatataatgatgatatcaagcttactgataatttgattccacctttg |
230 |
Q |
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| T |
17882726 |
gcctcttgagacaacatggactgtgctcaggaggtttggatataatgatgatatcaagcttgctgatgatttaattccacctttg |
17882642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 230
Target Start/End: Complemental strand, 15050289 - 15050105
Alignment:
| Q |
47 |
taaagaaggttgtgcgaaaaaatt-gcctgaaggtgtgaatgagcgaggactttctttggcaggatttatatatcttcatgccctcttcttagaaaaaat |
145 |
Q |
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| T |
15050289 |
taaagaaggttgtgcaaacaaatttgtctgaaggtgtgaatgaacgagaacttaccttgacatgatttctatatcttcatacccttttcatggaaaaggg |
15050190 |
T |
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| Q |
146 |
cccccgtgagaaaacatggaccgtgctcaggaagtttggatataatgatgatatcaagcttactgataatttgattccacctttg |
230 |
Q |
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| T |
15050189 |
gcctcctgaggcaacatggaccgtactcaggaagtttggatataattatgatatcaagctttctgatgatttatttccacctttg |
15050105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 15017491 - 15017360
Alignment:
| Q |
75 |
gaaggtgtgaatgagcgaggactttctttggcaggatttatatatcttcatgccctcttcttagaaaaaatcccccgtgagaaaacatggaccgtgctca |
174 |
Q |
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| T |
15017491 |
gaaggcgtgaatgaacgaggacttacttcaacaggatttctatttcttcatgcccttttcatagaaaaagggcctcttgaggcaacatggactgtgctaa |
15017392 |
T |
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| Q |
175 |
ggaagtttggatataatgatgatatcaagctt |
206 |
Q |
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| T |
15017391 |
aaaagtttggatataattatgatgtcaagctt |
15017360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 14781546 - 14781516
Alignment:
| Q |
20 |
gatccttgaacttgtggatcattaaaataaa |
50 |
Q |
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| T |
14781546 |
gatccttgaacttgtggatcattaaaataaa |
14781516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 36874288 - 36874454
Alignment:
| Q |
47 |
taaagaaggttgtgcgaaa-aaattgcctgaaggtgtgaatgagcgaggactttctttggcaggatttatatatcttcatgccctcttcttagaaaaaat |
145 |
Q |
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||||||||||||||| | | |||||| |||||||||| || || ||||||||| ||||| | |||||| ||| |||||||||||| ||| |||||||| |
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| T |
36874288 |
taaagaaggttgtgcaagataaattgtctgaaggtgttaacgaacgaggacttactttgacgggatttctatttcttcatgcccttttcatagaaaaagg |
36874387 |
T |
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| Q |
146 |
cccccgtgagaaaacatggaccgtgctcaggaagtttggatataatgatgatatcaagcttactgat |
212 |
Q |
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| T |
36874388 |
gcgtcttgagactacatggactgtgctcagaaagttcggatataatgatgaaatcaagcttgctgat |
36874454 |
T |
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