View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6491_low_13 (Length: 213)
Name: NF6491_low_13
Description: NF6491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6491_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 33302654 - 33302460
Alignment:
| Q |
1 |
gatgctggtaaacttaatgatgcaccaaacaatacagagaaatccggccctgggaggagggattcttcgaaatctggtccaaggaaagataagaaaatca |
100 |
Q |
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| T |
33302654 |
gatgctggtaaacttaatgatgcaccaaacaatacagagaaatccggccctgggaggagggattctttgaaatctggtccaaggaaagataagaaaatca |
33302555 |
T |
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| Q |
101 |
tgaaatttgttttaggtcaggagttgctgggttcagtgaagaatatgacgaggagtggtacttttatatcacttcctgcaggggaggaagtattt |
195 |
Q |
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| T |
33302554 |
tgaaatttgttttaggtcaggagttgctgggttcagtgaagaatatgacgaggagtggtacttttatatcacttcttgcaggggaggaagtattt |
33302460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 33418090 - 33417915
Alignment:
| Q |
20 |
atgcaccaaacaatacagagaaatccggccctgggaggagggattcttcgaaatctggtccaaggaaagataagaaaatcatgaaatttgttttaggtca |
119 |
Q |
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||||||| |||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| | |||||||||| ||||||| |
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| T |
33418090 |
atgcaccgaacaatgatgagaaatccggctatgggaggagggattcttcgaaatcgggtccaaggaaagatatgaaaaaaacgaaatttgttgtaggtca |
33417991 |
T |
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| Q |
120 |
ggagttgctgggttcagtgaagaatatgacgaggagtggtacttttatatcacttcctgcaggggaggaagtattt |
195 |
Q |
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|||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| |
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| T |
33417990 |
ggagttgcagggtacggtgaagaatatgacgaggagtggtacttttatatcacttcctgaaggagaggaaggattt |
33417915 |
T |
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