View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6491_low_3 (Length: 462)
Name: NF6491_low_3
Description: NF6491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6491_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 35447513 - 35447943
Alignment:
| Q |
16 |
atgtgcagaggctagaacttgcaggagtatgggatgagataatcgaaaagctgttaaactatgaacttccagaagaattagaagggaacgaaaattggaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35447513 |
atgtgcagaggctagaacttgcaggagtatgggatgagataatcgaaaagctgttaaactatgaacttccagaagaattagaagggaacgaagattggaa |
35447612 |
T |
|
| Q |
116 |
gaatataggaacgaagtttagaagactagttgagcctttggatattgctaattactatagacattcaaggaaccgtgatggacgtgtttatatggctaaa |
215 |
Q |
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| T |
35447613 |
gaatataggaacgaagtttagaagactagttgagcctttggatattgctaattactatagacattcaaggaaccgtgatggacgtgtttatatggctaaa |
35447712 |
T |
|
| Q |
216 |
ggtggaaggccaaaaaggtataggtatacacaaagatggttggaacattttgagaagagggatgaaggcggttactcagaatcatgtttttgggctgagg |
315 |
Q |
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| T |
35447713 |
ggtggaaggccaaaaaggtataggtatacacaaagatggttggaacattttgagaagagggatgaaggcggttactcagaatcatgtttttgggctgagg |
35447812 |
T |
|
| Q |
316 |
tggaggatctttgtcatgatcctgacaagccttttgatgatgttaaggaaaaggttgaggccttggaggggtttataagcaagtggcatgagaaaggtga |
415 |
Q |
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| T |
35447813 |
tggaggatctttgtcatgatcctgacaagccttttgatgatgttaaggaaaaggttgaggccttggaggggtttataagcaagtggcatgagaaaggtga |
35447912 |
T |
|
| Q |
416 |
agttggtaaggatgtgtttttgggggattct |
446 |
Q |
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| T |
35447913 |
agttggtaaggatgtgtttttgggggattct |
35447943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 438
Target Start/End: Complemental strand, 36882203 - 36881778
Alignment:
| Q |
16 |
atgtgcagaggctagaa-cttgcaggagtatgggatgagataatcgaaaagctgttaaactatgaacttccagaagaattagaagggaacgaaaattgga |
114 |
Q |
| |
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||||| ||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| || | ||| |
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| T |
36882203 |
atgtgaagaggctagaaacttgcaggagcatgggatgagataatcgaaaagctattaaactatgaactaccagaagaatttgaagggaagaaagaatggg |
36882104 |
T |
|
| Q |
115 |
agaatataggaacgaagtttagaagactagttgagcctttggatattgctaattactatagacattcaa--ggaaccgtgatggacgtgtttatatggct |
212 |
Q |
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| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
36882103 |
tcgagataggaacaaagtttagaagactagttgagcctttagatattgctaattactatagacattcaattggaaccgtgatggacgtgtttatttggct |
36882004 |
T |
|
| Q |
213 |
aaaggtggaaggccaaaaaggtataggtatacacaaagatggttggaacattttgagaagagggatgaaggcggttactcagaatcatgtttttgggctg |
312 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
36882003 |
aaaggaggaaaaccaaaaaggtataggtatacacaaagatggttggaacatgctgagaagaggggagaaggtggttactcagagtcatgtttttgggctg |
36881904 |
T |
|
| Q |
313 |
aggtggaggatctttgtcatgatcctgacaagccttttgatgatgttaaggaaaaggttgaggccttggaggggtttataagcaagtggcatgagaaagg |
412 |
Q |
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||||||| ||||||| ||||||| |||| | ||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||| ||||||| || |
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| T |
36881903 |
aggtggaagatctttctcatgatactgagagctcttttgaagatgttcaggaaaaagttgaggccttggagggatttataagcaagtgggatgagaatgg |
36881804 |
T |
|
| Q |
413 |
tgaagttggtaaggatgtgtttttgg |
438 |
Q |
| |
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||| |||||||||||||||||||||| |
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| T |
36881803 |
tgaggttggtaaggatgtgtttttgg |
36881778 |
T |
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