View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6491_low_6 (Length: 345)
Name: NF6491_low_6
Description: NF6491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6491_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 45968711 - 45969037
Alignment:
| Q |
19 |
ggtggaggggatgaggaagatttgaaggagaagaattgtgatagtttgaagaatgtaattgaggcaaagaatggtgatgaggaagagacagaggtggaaa |
118 |
Q |
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| T |
45968711 |
ggtggaggggatgaggaagatttgaaggagaagaattgtgatagtttgaagaatgtaattgtggcaaagaatggtgatgaggaagagacagatgtggaga |
45968810 |
T |
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| Q |
119 |
aagatgcatggaagttattgcagaaagcgcttgttacatattgtgatacacctgttggaactgttgcggcaaatgatgattcggggtcacccttgaatta |
218 |
Q |
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| T |
45968811 |
aagatgcatggaagttattgcagaaagcgcttgttacatattgtgatacacctgttggaactgttgcggcaaatgatgattcggggtcacccttgaatta |
45968910 |
T |
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| Q |
219 |
tgatcaggtctttattcgagatttcgtcccttctgctcttgctttcttgcttaaaggagaacatgagattgtcaagaactttctccttcacaccttgcaa |
318 |
Q |
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| T |
45968911 |
tgatcaggtctttattcgagatttcgtcccttctgctcttgctttcttgcttaaaggagaacatgagattgtcaagaactttctccttcacaccttgcaa |
45969010 |
T |
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| Q |
319 |
ctccaggtaataattatcttcggtgtc |
345 |
Q |
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| T |
45969011 |
ctccaggtaataattatcttcggtgtc |
45969037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 211 - 329
Target Start/End: Complemental strand, 37654993 - 37654875
Alignment:
| Q |
211 |
ttgaattatgatcaggtctttattcgagatttcgtcccttctgctcttgctttcttgcttaaaggagaacatgagattgtcaagaactttctccttcaca |
310 |
Q |
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| T |
37654993 |
ttgaattatgatcaagtgtttattcgggattttgttccgtcggctcttgcttttttgcttaaaggggatactgagattgttaagtactttcttcttcata |
37654894 |
T |
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| Q |
311 |
ccttgcaactccaggtaat |
329 |
Q |
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| T |
37654893 |
ccttgcaattgcaggtaat |
37654875 |
T |
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