View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6492_high_4 (Length: 398)
Name: NF6492_high_4
Description: NF6492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6492_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 784816 - 784444
Alignment:
| Q |
11 |
cacagaagttttctcatgtatttacaacaccttgagacaagttttcaagtgtaagtatttgcctagacaaagatatgataatgctacttacaactataat |
110 |
Q |
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| T |
784816 |
cacagaagttttctcatgtatttacaacaccttgagacaagttttcaagtgtaagtatttgcctagacaaagatatgataatgctacttacaactataat |
784717 |
T |
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| Q |
111 |
taagtcaaattatattaacatgttttcttcatgtttacagatgtggtgccttattcagctcatatcccatcttatgctgatatttggggatgggtcctgg |
210 |
Q |
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| T |
784716 |
taagtcaaattatattaacatgttttcttcatgtttacagatgtggtgccttattcagctcatatcccatcttatgctgatatttggggatgggtcctgg |
784617 |
T |
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| Q |
211 |
taaaattatagacttattgacgataaatttcgaagttttgacaagttcttatgaccaaagctaagtattctatgttaatttttccttggcctataacagg |
310 |
Q |
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| T |
784616 |
taaaattatagac-tattgacgataaattttgaagttttgacaagttcttatgaccaaagctaagtattctatgttaatttttccttggcctataacagg |
784518 |
T |
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| Q |
311 |
cttcagattctccattggaccttagtgctgaagaattagatatcagaatgagacagaggattattgaagagaat |
384 |
Q |
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| T |
784517 |
cttcagattctccattggaccttagtgctgaagaattagatatcagaatgagacagaggattattgaagagaat |
784444 |
T |
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