View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6492_high_7 (Length: 235)
Name: NF6492_high_7
Description: NF6492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6492_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 62052 - 62262
Alignment:
| Q |
9 |
aggagcagagagtagaaggtatgatagaaaaataaaatactagtattatatataaactactttttccaaagtggcatataatgaaacaaggtcgttgatg |
108 |
Q |
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| T |
62052 |
aggaacagtgagtagaaggtatgatagaaaaataaaatactagtattatatataaactactttttccaaagtggcatataatgaaacaaggtcgttgatg |
62151 |
T |
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| Q |
109 |
acaaaagtaagttcacttgaatatatctcagtagattaaaatcataaacatccactcatataagtcttttgtttcaatattgaatactcaatttaatgct |
208 |
Q |
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| T |
62152 |
acaaaagtaagttcacttgaatatatctcattagattaaaatcataaacatccactcatataagtcttttgtttcaatattgaatactcaatttaatgct |
62251 |
T |
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| Q |
209 |
aaagtcaaata |
219 |
Q |
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| T |
62252 |
aaagtcaaata |
62262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 111481 - 111592
Alignment:
| Q |
111 |
aaaagtaagttcacttgaatatatctcagtagattaaaatcataaacatccactcatataagtcttttgtttcaa----tattgaatactcaatttaatg |
206 |
Q |
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| T |
111481 |
aaaagtaaactcacttgaatatatgtcattagattaaaatcagaaacatccactcttgtaagtcttctgtttcaatggttggtgaatactcaatttaatg |
111580 |
T |
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| Q |
207 |
ctaaagtcaaat |
218 |
Q |
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| T |
111581 |
ctcaagtcaaat |
111592 |
T |
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