View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6492_low_1 (Length: 519)
Name: NF6492_low_1
Description: NF6492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6492_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 8 - 500
Target Start/End: Complemental strand, 3016843 - 3016351
Alignment:
| Q |
8 |
gagcacagacacttcaaattgaacgtgtatcttgtgtacaacaacagacaagtatcaatgtcggatactgacattttagattgaaaaacgtgtcgcttgt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016843 |
gagcacagacacttcaaattgaacgtgtatcttgtgtacaacaacagacaagtatcaatgtcggatactgacattttagattgaaaaacgtgtcgcttgt |
3016744 |
T |
|
| Q |
108 |
ccaacaaccgacaagtatccatgtctgacaccgacacattgatttcattggactactttagctttatcaaattattactagtgttgacgtatcaatgtca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3016743 |
ccaacaaccgacaagtatccatgtctgacaccgacacattgatttcattggactactttagctttatcaaattattactagtgttgacgtatcagtgtca |
3016644 |
T |
|
| Q |
208 |
gtgatgtgtctgtatccatgtcagtgcttcatagatgaccgtgtcccatttattttatcccnnnnnnnctttctctccatattttaacatgaggatgttt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3016643 |
gtgatgtgtctgtatccatgtcagtgcttcatagatgaccgtgtcccatttattttatccctttttttctttctctccatattttaacatgaggatgttt |
3016544 |
T |
|
| Q |
308 |
atggtttcatgttgcagttattcttcattcttgtgttggnnnnnnngctctgaagttaacagcatcgtcgtgtgaactgattgaagcaaagatgggtttt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016543 |
atggtttcatgttgcagttattcttcattcttgtgttggaaaaaaagctctgaagttaacagcatcgtcgtgtgaactgattgaagcaaagatgggtttt |
3016444 |
T |
|
| Q |
408 |
gaaccattgatttggtattgcaagccagaaccaaacagtatttggtctaaaacagtagatagtgcttttgggtcatatacaccatgtgcaatc |
500 |
Q |
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| T |
3016443 |
gaaccattgatttggtattgcaagccagaaccaaacagtatttggtctaaaacagtagatagtgcttttgggtcatatacaccatgtgcaatc |
3016351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 377 - 499
Target Start/End: Complemental strand, 3044892 - 3044770
Alignment:
| Q |
377 |
gtgtgaactgattgaagcaaagatgggttttgaaccattgatttggtattgcaagccagaaccaaacagtatttggtctaaaacagtagatagtgctttt |
476 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3044892 |
gtgttaaccgattgaagcaaagatgggttttgaaccattggtttggtactgcaagccagaaccaaacagtatttggtctaaaacagtagatagtgctttt |
3044793 |
T |
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| Q |
477 |
gggtcatatacaccatgtgcaat |
499 |
Q |
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| T |
3044792 |
gggtcatatacaccatgtgcaat |
3044770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 19941743 - 19941702
Alignment:
| Q |
169 |
ctttatcaaattattactagtgttgacgtatcaatgtcagtg |
210 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
19941743 |
ctttctcaaattattactagtgttgatgtatcaatgtcagtg |
19941702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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