View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6492_low_10 (Length: 248)

Name: NF6492_low_10
Description: NF6492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6492_low_10
NF6492_low_10
[»] chr4 (8 HSPs)
chr4 (8-248)||(15647663-15647903)
chr4 (10-248)||(23156746-23156984)
chr4 (8-248)||(17825377-17825617)
chr4 (62-207)||(36952638-36952783)
chr4 (50-248)||(10348289-10348485)
chr4 (43-102)||(26695248-26695307)
chr4 (37-83)||(3128775-3128821)
chr4 (17-117)||(137421-137521)
[»] chr2 (5 HSPs)
chr2 (8-248)||(21965979-21966219)
chr2 (50-117)||(26245298-26245365)
chr2 (50-117)||(45718479-45718546)
chr2 (217-246)||(16078610-16078639)
chr2 (22-102)||(35489137-35489216)
[»] chr7 (10 HSPs)
chr7 (8-248)||(37074186-37074426)
chr7 (10-248)||(12122974-12123212)
chr7 (8-248)||(588170-588410)
chr7 (8-248)||(22864343-22864583)
chr7 (8-248)||(47550210-47550450)
chr7 (8-248)||(47554675-47554915)
chr7 (8-163)||(20704174-20704329)
chr7 (8-163)||(20872218-20872373)
chr7 (10-75)||(24820494-24820559)
chr7 (26-102)||(18768706-18768782)
[»] chr3 (11 HSPs)
chr3 (8-248)||(17152406-17152646)
chr3 (10-248)||(3516072-3516310)
chr3 (8-164)||(9820446-9820602)
chr3 (88-248)||(9827312-9827472)
chr3 (8-248)||(8596643-8596883)
chr3 (62-246)||(23823152-23823336)
chr3 (8-248)||(16665364-16665605)
chr3 (10-162)||(10755451-10755603)
chr3 (8-163)||(30737907-30738062)
chr3 (215-247)||(42449687-42449719)
chr3 (43-89)||(21309490-21309536)
[»] chr6 (5 HSPs)
chr6 (10-248)||(18293991-18294229)
chr6 (8-226)||(2895589-2895807)
chr6 (8-248)||(5390113-5390353)
chr6 (25-102)||(12150240-12150317)
chr6 (205-246)||(15675314-15675355)
[»] chr1 (6 HSPs)
chr1 (8-248)||(49371153-49371393)
chr1 (50-248)||(48711422-48711620)
chr1 (179-246)||(52207138-52207205)
chr1 (41-135)||(39431604-39431698)
chr1 (217-246)||(7953197-7953226)
chr1 (195-248)||(39431758-39431811)
[»] chr5 (6 HSPs)
chr5 (8-118)||(6677320-6677430)
chr5 (8-185)||(11267411-11267588)
chr5 (8-248)||(29326584-29326824)
chr5 (38-248)||(22112754-22112963)
chr5 (25-78)||(41767686-41767739)
chr5 (26-102)||(38358770-38358846)
[»] scaffold0003 (1 HSPs)
scaffold0003 (8-237)||(223335-223564)
[»] scaffold0032 (1 HSPs)
scaffold0032 (9-248)||(56997-57236)
[»] chr8 (3 HSPs)
chr8 (8-248)||(10800276-10800516)
chr8 (35-123)||(36493693-36493781)
chr8 (205-246)||(16374720-16374761)
[»] scaffold0121 (1 HSPs)
scaffold0121 (8-246)||(32926-33164)
[»] scaffold0746 (1 HSPs)
scaffold0746 (32-72)||(1747-1787)
[»] scaffold0070 (1 HSPs)
scaffold0070 (32-72)||(27415-27455)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 15647903 - 15647663
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    ||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15647903 gacatcatcacatcaagaccttcggcagcaaagagaaatagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 15647804  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15647803 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 15647704  T
208 taagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    |||||||||||||||||||||||||||||||||||||||||    
15647703 taagtaacaccaatccaccgagtcataagccttttcaaaat 15647663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 23156984 - 23156746
Alignment:
10 catcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttgga 109  Q
    ||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||    
23156984 catcatcacattaaggccttcaacagctaacagaaacagaaaaggggaaagaggatccccttgacggagttctctttcaaaatgaaactcatcagtcgga 23156885  T
110 caaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatcta 209  Q
    ||||||||||||| ||| || |||||||| || | ||| ||||||||||||||| |||||||| ||  ||||||||||||||||  ||||||||||||||    
23156884 caaccattcactagcacggaagctgtagccgttgcaacgcactccataatccaagaacgccacatacgcggaaaattcattttacccatcacctcatcta 23156785  T
210 agtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    |||| | |||||||||||| ||||| |||||||||||||    
23156784 agtacccccaatccaccgaatcatacgccttttcaaaat 23156746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 17825617 - 17825377
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    ||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||  || |    
17825617 gacatcatcacattaagaccttcagcagctaacaaaaacaaaaatggggaaagagggtccccttgacgaaggcctctctcaaaatggaactcatttgtcg 17825518  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    |||||||||| ||||| || ||||||||||| || |||| |||||||||||||||| | | ||||     || |||||||||||||| ||||||||||||    
17825517 gacaaccatttactaatactgatgctgtagccgttgtaatacactccataatccaagagcaccacaggtgcgaaaaattcattttaaccatcacctcatc 17825418  T
208 taagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    |||||| | | ||||||| || |||||  | ||||||||||    
17825417 taagtacctcaaatccacggaatcatacactttttcaaaat 17825377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 207
Target Start/End: Original strand, 36952638 - 36952783
Alignment:
62 ggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccattcactaacacagatgctgtagcagtggtaacacactccataatcc 161  Q
    |||||||||||||| || ||  |||||| || ||||||||| || || || ||||| |||||||||||||  || || || |||| ||||||||||||||    
36952638 ggatccccttgacggagacccttttcaagattaaactcatcagtcgggcacccattaactaacacagatgtcgtcgccgttgtaatacactccataatcc 36952737  T
162 aacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    || | |||||   | ||||||||||||| |||||||| ||||||||    
36952738 aagaccgccaaacacacggaaaattcatcttaatcataacctcatc 36952783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 248
Target Start/End: Complemental strand, 10348485 - 10348289
Alignment:
50 aaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccattcactaacacagatgctgtagcagtggtaacac 149  Q
    |||||||| ||||| ||||||||||| |  ||||||||||||  ||||||||| || ||||| ||||| || || || || ||||| || || || || |    
10348485 aaaggggagagagggtccccttgacgcaagcctctttcaaaacaaaactcatctgtcggacacccatttaccaagactgaagctgttgctgtcgttacgc 10348386  T
150 actccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    |||||||||||||   ||||||     |||||||||||||||||  |||||| ||||| | |||   |||||||||||||||||| ||||| |||||||    
10348385 actccataatccaggcacgccataataacggaaaattcattttagacatcacttcatcaaggta--cccaatccaccgagtcatatgccttctcaaaat 10348289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 26695248 - 26695307
Alignment:
43 aaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatc 102  Q
    ||||| ||||||||||||||||||||| ||||| |  ||||| | |||||||||||||||    
26695248 aaacaaaaaaggggaaagaggatccccctgacgcaagcctctctgaaaatgaaactcatc 26695307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 3128821 - 3128775
Alignment:
37 taacagaaacagaaaaggggaaagaggatccccttgacgaagtcctc 83  Q
    |||||| ||||  ||||||||||||||||||||||||||||| ||||    
3128821 taacaggaacaagaaaggggaaagaggatccccttgacgaagacctc 3128775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 137421 - 137521
Alignment:
17 acatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccat 116  Q
    |||||||  |||||||| || |||| ||| | |||||||||||| |||||||||||||| || || || || | ||||||||| || || |||| |||||    
137421 acatcaaacccttcagctgccaacataaataaaaaaggggaaaggggatccccttgacggagccccctctcgatatgaaactcctctgtcggactaccat 137520  T
117 t 117  Q
    |    
137521 t 137521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 21965979 - 21966219
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
21965979 gacatcatcacatcaaggccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagacctctttcaaaatgaaactcatcggtcg 21966078  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    | ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
21966079 ggcaaccattcactaacactgatgctgtagcagttgtaacacactccataatccaacaacgccacttagtcggaaaattcattttaatcatcacctcatc 21966178  T
208 taagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    |||||||| ||||||||||||||||||||||||||||||||    
21966179 taagtaaccccaatccaccgagtcataagccttttcaaaat 21966219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 26245365 - 26245298
Alignment:
50 aaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccatt 117  Q
    ||||| || |||||||||||||||||||| ||||| || | ||||||||| || ||||||| ||||||    
26245365 aaaggtgatagaggatccccttgacgaaggcctctctctatatgaaactcctcagttggactaccatt 26245298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 45718479 - 45718546
Alignment:
50 aaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccatt 117  Q
    ||||| || |||||||||||||||||||| ||||| || | ||||||||| || ||||||| ||||||    
45718479 aaaggtgatagaggatccccttgacgaaggcctctctctatatgaaactcctcagttggactaccatt 45718546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 246
Target Start/End: Complemental strand, 16078639 - 16078610
Alignment:
217 ccaatccaccgagtcataagccttttcaaa 246  Q
    ||||||||||||||||||||||||||||||    
16078639 ccaatccaccgagtcataagccttttcaaa 16078610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 35489137 - 35489216
Alignment:
22 aagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatc 102  Q
    |||||||||||| || | |||||||| ||||||||| || |||| ||||||||| || ||||| |  ||||||||||||||    
35489137 aagaccttcagccgcaatcagaaacataaaaggggataggggat-cccttgacggaggcctctctataaatgaaactcatc 35489216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 37074426 - 37074186
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
37074426 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgtagtcctctttcaaaatgaaactcatcggtcg 37074327  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
      ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||    
37074326 agcaaccattcactaacactgaagctgtagcagttgtaacacactccataatccaacaccgccacttagtcggaaaattcattttgatcatcacctcatc 37074227  T
208 taagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    |||||||| ||||||||||||||||||||||||||||||||    
37074226 taagtaaccccaatccaccgagtcataagccttttcaaaat 37074186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 12122974 - 12123212
Alignment:
10 catcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttgga 109  Q
    ||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |  |||    
12122974 catcatcacattaagtccttcagcagctaacagaaacagaaacggggaaagaggatccccttgacggagtccactttcaaaatgaaactcatcagccgga 12123073  T
110 caaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatcta 209  Q
    ||||||||||||| ||| || |||||||| || ||||| ||||||||||||||| |||||||| ||  |||||||| |||||||  ||||||||||||||    
12123074 caaccattcactagcacggaagctgtagccgttgtaacgcactccataatccaagaacgccacatatgcggaaaatacattttacccatcacctcatcta 12123173  T
210 agtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    |||| | |||||||||||| |||||  ||||||||||||    
12123174 agtacctccaatccaccgaatcatacaccttttcaaaat 12123212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 588170 - 588410
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    ||||||||||||| ||| |||||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || |    
588170 gacatcatcacattaaggccttcagcagctaacaaaaacaaaaacggggaaagaggatccccttggcgaagtcctctttcaaaatgaaactcatcagtcg 588269  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    |||| ||||| |||||||| |||| |||||| || || |||||||||||||||||| |||||||   |  ||||||||||||||||  ||||||||||||    
588270 gacacccattaactaacactgatgttgtagccgttgtgacacactccataatccaagaacgccatagacgcggaaaattcattttagccatcacctcatc 588369  T
208 taagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    ||| || | |||||||||||| ||||| ||||| |||||||    
588370 taaatacctccaatccaccgaatcatacgccttctcaaaat 588410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 22864583 - 22864343
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    |||||||||||||  | ||||||||| ||||| || |||| ||| || ||||| |||||||||||||| || || ||||||| || ||||||||| || |    
22864583 gacatcatcacatttaaaccttcagctgctaaaaggaacaaaaacggagaaagcggatccccttgacggagacccctttcaagattaaactcatcagtcg 22864484  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    | || ||||| |||||||||||||  || || || |||| ||| |||||||||||| | |||||   | ||||||||||||| |||||||| ||||||||    
22864483 ggcacccattaactaacacagatgtcgtcgccgttgtaatacattccataatccaagaccgccaaacacacggaaaattcatcttaatcataacctcatc 22864384  T
208 taagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
     | ||| | ||||||  | || |||||||| ||||||||||    
22864383 aatgtagccccaatcatcagaatcataagctttttcaaaat 22864343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 47550210 - 47550450
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    |||||||||||||  | | ||||||| ||||| || |||| ||| || ||||| |||||||||||||| || || ||||| | || ||||||||| || |    
47550210 gacatcatcacatttaaatcttcagctgctaaaaggaacaaaaacggagaaagcggatccccttgacggagacccctttcgagattaaactcatcagtcg 47550309  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    |||| ||||| |||||||||||||  || || || |||| ||| |||||||||||| | ||| |   | ||||||||||||| |||||||| ||||||||    
47550310 gacacccattaactaacacagatgtcgtcgccgttgtaatacattccataatccaagaccgcgaaacacacggaaaattcatcttaatcataacctcatc 47550409  T
208 taagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
     | ||||| |||||| || || |||||||| ||||||||||    
47550410 aatgtaaccccaatcaacagaatcataagctttttcaaaat 47550450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 47554675 - 47554915
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    |||||||||||||  | | ||||||| ||||| || |||| ||| || ||||| |||||||||||||| || || ||||| | || ||||||||| || |    
47554675 gacatcatcacatttaaatcttcagctgctaaaaggaacaaaaacggagaaagcggatccccttgacggagacccctttcgagattaaactcatcagtcg 47554774  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    |||| ||||| |||||||||||||  || || || |||| ||| |||||||||||| | ||| |   | ||||||||||||| |||||||| ||||||||    
47554775 gacacccattaactaacacagatgtcgtcgccgttgtaatacattccataatccaagaccgcgaaacacacggaaaattcatcttaatcataacctcatc 47554874  T
208 taagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
     | ||||| |||||| || || |||||||| ||||||||||    
47554875 aatgtaaccccaatcaacagaatcataagctttttcaaaat 47554915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 20704329 - 20704174
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    |||||||| |||| ||| ||||| || ||||||| ||||| ||| |||||||||||||||||||| || || ||||| || |||||||||||||| || |    
20704329 gacatcataacatgaaggccttctgctgctaacaaaaacaaaaatggggaaagaggatccccttgccggagacctctctcgaaatgaaactcatccgtcg 20704230  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaa 163  Q
    | || ||||| |||| ||| || || || || || |||||||| ||||| ||||||    
20704229 ggcacccattaactagcacggaagcggttgccgttgtaacacattccattatccaa 20704174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 20872373 - 20872218
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    |||||||| |||| ||| ||||| || ||||||| ||||| ||| |||||||||||||||||||| || || ||||| || |||||||||||||| || |    
20872373 gacatcataacatgaaggccttctgctgctaacaaaaacaaaaatggggaaagaggatccccttgccggagacctctctcgaaatgaaactcatccgtcg 20872274  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaa 163  Q
    | || ||||| |||| ||| || || || || || |||||||| ||||| ||||||    
20872273 ggcacccattaactagcacggaagcggttgccgttgtaacacattccattatccaa 20872218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 24820494 - 24820559
Alignment:
10 catcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacg 75  Q
    ||||||||||| ||| |||||||| |||| |||||||||||| |||||||||||||||||||||||    
24820494 catcatcacattaaggccttcagccgctagcagaaacagaaacggggaaagaggatccccttgacg 24820559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 18768706 - 18768782
Alignment:
26 ccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatc 102  Q
    |||||||| |||| || ||||| ||||||||| ||||||||||| ||||| |  ||||| | |||||||||||||||    
18768706 ccttcagccgctagcaaaaacaaaaaaggggacagaggatccccctgacgtaaacctctctgaaaatgaaactcatc 18768782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 17152646 - 17152406
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    ||||||||||||| ||| |||||||||||||| | |||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |    
17152646 gacatcatcacattaaggccttcagcagctaatacaaacagaaaaggggaaaggggatccccttgaaggagtcctctttcaaaatgaaactcatcggtcg 17152547  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||    
17152546 gacaaccattcactaacactgatgctgtagcagttgtaacacactccataatccaagaacgccacttaggcggaaaattcattttaatcaacacctcatc 17152447  T
208 taagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    |||||| | |||||||||||| ||||| |||||||||||||    
17152446 taagtatccccaatccaccgaatcatacgccttttcaaaat 17152406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 3516072 - 3516310
Alignment:
10 catcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttgga 109  Q
    ||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
3516072 catcatcacattaaggccttcagcagctaacagaaacagaaacggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcagtcgga 3516171  T
110 caaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatcta 209  Q
    || |||||||||| |||||| |||||||| || ||||| ||||||||||||||| ||||||||||| ||||||||  |||||||  || |||||||||||    
3516172 cagccattcactagcacagaagctgtagccgttgtaacgcactccataatccaagaacgccacttatacggaaaacacattttacccaacacctcatcta 3516271  T
210 agtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    |||| | ||| |||||||| ||||| |||||||||||||    
3516272 agtacctccagtccaccgaatcatatgccttttcaaaat 3516310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 9820446 - 9820602
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |    
9820446 gacatcatcacatcaaggccttcagcagctaacacaaacaaaaaaggggaaagaggatccccttgacggagttctctttcaaaatgaaactcatcggtcg 9820545  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaac 164  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||    
9820546 gacaaccattcactaacactgatgctgttgcagttgtaacacactccataatccaac 9820602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 9827472 - 9827312
Alignment:
88 aaaatgaaactcatcggttggacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattc 187  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||  |||||||||    
9827472 aaaatgaaactcatcggtcagacaaccattcactaacactgatgctgtagcagttgtaacacactccataatccaaccacgccacttagttggaaaattc 9827373  T
188 attttaatcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
9827372 attttaattatcacctcatctaagtaaccccaatccaccgagtcatacgccttttcaaaat 9827312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 8596643 - 8596883
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    |||||||| |||| ||||||||| || |||||||  |||| ||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| || |    
8596643 gacatcattacattaagaccttctgctgctaacaagaacaaaaacggggaaagaggatccccttgacgaaggcctctctcaaaatggaactcatctgtcg 8596742  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    |||||||||| ||||| || ||||  ||||| || ||||||||||||||||||||| | ||||||     ||||||||||||||||||||||||||||||    
8596743 gacaaccattaactaaaactgatgtcgtagccgttgtaacacactccataatccaagagcgccacaattgcggaaaattcattttaatcatcacctcatc 8596842  T
208 taagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    ||| |||| |||||| || || ||||| || ||||||||||    
8596843 taaataactccaatcaacggaatcatatgctttttcaaaat 8596883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 246
Target Start/End: Original strand, 23823152 - 23823336
Alignment:
62 ggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccattcactaacacagatgctgtagcagtggtaacacactccataatcc 161  Q
    ||||||||||| ||||| |||||||||||||| || || || || ||||||||||| ||||| |||||||  || || || || ||||||||||||||||    
23823152 ggatccccttggcgaaggcctctttcaaaatggaattcgtctgtcggacaaccatttactaaaacagatgtcgttgccgttgtgacacactccataatcc 23823251  T
162 aacaacgccacttagacggaaaattcattttaatcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaa 246  Q
    || | ||||||     ||||||||||||||||||||||||||| || ||||| | ||||||||| ||||||||||| ||||||||    
23823252 aagagcgccacaggtgcggaaaattcattttaatcatcacctcttccaagtacctccaatccacggagtcataagctttttcaaa 23823336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 16665364 - 16665605
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggg-gaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggtt 106  Q
    |||||||||||||  | |||||| || ||||| || |||  |||| || ||||| |||||||||||||| || || ||||||| || ||||||||| ||     
16665364 gacatcatcacatttaaaccttctgctgctaaaaggaaccaaaaatggagaaagcggatccccttgacggagacccctttcaagattaaactcatcagtc 16665463  T
107 ggacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcat 206  Q
    || || ||||| ||||||||||||||  | ||  | |||| |||||||||||||||| | |||||   | ||||||||||||| |||||||| ||||| |    
16665464 gggcacccattaactaacacagatgccatcgccattgtaatacactccataatccaagaccgccaaacacacggaaaattcatcttaatcataacctcgt 16665563  T
207 ctaagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    | | ||| | |||||| || || |||||||| ||||||||||    
16665564 caatgtagccccaatcaacagaatcataagctttttcaaaat 16665605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 10755451 - 10755603
Alignment:
10 catcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttgga 109  Q
    |||||||||||  ||||||||||| ||||| || |||| ||| || ||||| ||||||||||| || || || ||||||| |  ||||||||| || |||    
10755451 catcatcacattgagaccttcagctgctaaaaggaacaaaaacggtgaaagcggatccccttgccggagacccctttcaagagtaaactcatctgtcgga 10755550  T
110 caaccattcactaacacagatgctgtagcagtggtaacacactccataatcca 162  Q
    || ||||| |||||||| ||||  || || || |||| |||||||||||||||    
10755551 cacccattaactaacactgatgtcgttgccgttgtaatacactccataatcca 10755603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 30737907 - 30738062
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    ||||||||||||| ||| ||||| |||||||||| ||||| ||| || ||||||||||||| | |||| || ||||| ||||| | |||||||||  | |    
30737907 gacatcatcacattaaggccttcggcagctaacaaaaacaaaaacggagaaagaggatcccttggacggagacctctctcaaagttaaactcatcaatcg 30738006  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaa 163  Q
    |||| ||||| ||||||||    |  || || || |||||||||||||||||||||    
30738007 gacatccattaactaacactaccgtcgttgccgttgtaacacactccataatccaa 30738062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 42449687 - 42449719
Alignment:
215 caccaatccaccgagtcataagccttttcaaaa 247  Q
    |||||||||||||||||||||||||||||||||    
42449687 caccaatccaccgagtcataagccttttcaaaa 42449719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 21309490 - 21309536
Alignment:
43 aaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaa 89  Q
    ||||| |||||| ||||||||||| |||||||||| |||||||||||    
21309490 aaacaaaaaaggagaaagaggatcaccttgacgaaatcctctttcaa 21309536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 18294229 - 18293991
Alignment:
10 catcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttgga 109  Q
    |||| |||||| ||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
18294229 catcgtcacattaaggccttcagcagctaacaaaaatagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaataaaactcatcagttgga 18294130  T
110 caaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatcta 209  Q
    ||||||||||||| |||||| |||||||| || ||||| ||||||||||||||| |||||||| ||  |||||||| |||||||  |||||||||| |||    
18294129 caaccattcactagcacagaagctgtagccgttgtaacgcactccataatccaagaacgccacatacgcggaaaatacattttacccatcacctcaccta 18294030  T
210 agtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    |||| | |||||||||||| ||||| |||||||||||||    
18294029 agtacctccaatccaccgaatcatacgccttttcaaaat 18293991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 2895589 - 2895807
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    ||||||||||| | ||| |||||||| |||| |||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||| || |    
2895589 gacatcatcacgttaaggccttcagccgctagcagaaacagaaacggagatagaggatccccttgacggagtcctctttcaaaatgaaactcatcagtcg 2895688  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    | |||||||||||||  || || ||||||||||| ||||| ||||||||||||||| | | ||||  |  ||||||   |||||||  |||||| |||||    
2895689 ggcaaccattcactagtactgaagctgtagcagttgtaacgcactccataatccaagagcaccacagacgcggaaataacattttatccatcacttcatc 2895788  T
208 taagtaacaccaatccacc 226  Q
    |||||| | ||||||||||    
2895789 taagtacctccaatccacc 2895807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 5390353 - 5390113
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    |||||||||||||  | |||||| |||||||| || |||| ||| || ||||| |||||||||||||| || || |||||||    ||||||||  || |    
5390353 gacatcatcacatttaaaccttctgcagctaataggaacaaaaacggagaaagcggatccccttgacggaggcccctttcaaggataaactcattagtcg 5390254  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    | || ||||| |||||||||||||| || || || || | |||||||||||||||| | ||| |   | ||  ||||||||| |||||||| ||||||||    
5390253 ggcacccattaactaacacagatgccgttgccgttgttatacactccataatccaagaccgctaaacacacaaaaaattcatcttaatcataacctcatc 5390154  T
208 taagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
     |  |||| |||||| || || |||||||| ||||||||||    
5390153 aatataaccccaatcaacagaatcataagctttttcaaaat 5390113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 12150317 - 12150240
Alignment:
25 accttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatc 102  Q
    ||||||| ||||||| ||||| |||||| | ||||||||||| ||||||||||| ||||| || |||  |||||||||    
12150317 accttcaacagctaatagaaaaagaaaacgagaaagaggatcaccttgacgaagccctctctccaaaataaactcatc 12150240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 15675314 - 15675355
Alignment:
205 atctaagtaacaccaatccaccgagtcataagccttttcaaa 246  Q
    ||||||||||| ||| |||||||| |||||||||||||||||    
15675314 atctaagtaaccccagtccaccgaatcataagccttttcaaa 15675355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 49371153 - 49371393
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    |||||||| |||| |||||||||| ||||||||| ||||| ||| ||| ||||||||||||||||||| || ||||| |||||||| |||||||| || |    
49371153 gacatcattacattaagaccttcaacagctaacaaaaacaaaaacgggaaaagaggatccccttgacggaggcctctctcaaaatggaactcatctgtcg 49371252  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    |||||||||| ||||| || ||||| ||||| |  ||||||||||||||||||||| | ||||||  |  ||||||||||||||||||||||||||||||    
49371253 gacaaccatttactaaaactgatgccgtagccgctgtaacacactccataatccaagagcgccacagatgcggaaaattcattttaatcatcacctcatc 49371352  T
208 taagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    |||||| | ||||||||| || ||||| || ||||||||||    
49371353 taagtacctccaatccacggaatcatatgctttttcaaaat 49371393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 248
Target Start/End: Original strand, 48711422 - 48711620
Alignment:
50 aaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccattcactaacacagatgctgtagcagtggtaacac 149  Q
    |||||||| | ||| ||||||| ||| |  ||||||||||||  ||||||||| || ||||| ||||| || || || || ||||| || || || ||||    
48711422 aaaggggagatagggtccccttaacgcaagcctctttcaaaacaaaactcatctgtcggacacccatttaccaagactgaagctgttgctgtcgttacac 48711521  T
150 actccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    |||||||||||||   ||||||     |||||||||||||||||  |||||| ||||| |  || | |||||||||||||||||| ||||| |||||||    
48711522 actccataatccaggcacgccataataacggaaaattcattttagacatcacttcatcaagatacccccaatccaccgagtcatatgccttctcaaaat 48711620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 52207138 - 52207205
Alignment:
179 ggaaaattcattttaatcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaa 246  Q
    ||||||||||||||||||||||| |||||||||||   | ||| |||||| || || |||||||||||    
52207138 ggaaaattcattttaatcatcacatcatctaagtacttctaattcaccgaatcgtatgccttttcaaa 52207205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 39431604 - 39431698
Alignment:
41 agaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccattcactaacacagatgctgt 135  Q
    ||||||||||||||||| ||||| ||||| ||||| ||||| |||| ||   |||| |||||| | |||| ||| ||||||| |||||| |||||    
39431604 agaaacagaaaaggggacagagggtccccctgacggagtccccttttaagtggaaattcatcgataggactaccgttcactagcacagaagctgt 39431698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 246
Target Start/End: Complemental strand, 7953226 - 7953197
Alignment:
217 ccaatccaccgagtcataagccttttcaaa 246  Q
    ||||||||||||||||||||||||||||||    
7953226 ccaatccaccgagtcataagccttttcaaa 7953197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 39431758 - 39431811
Alignment:
195 tcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    |||| |||||||| | ||||| |||||| || ||||||||||||||||||||||    
39431758 tcataacctcatcaaggtaaccccaatcaacagagtcataagccttttcaaaat 39431811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 6677430 - 6677320
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
6677430 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgtagtcctctttcaaaatgaaactcatcggtcg 6677331  T
108 gacaaccattc 118  Q
    | |||||||||    
6677330 ggcaaccattc 6677320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 11267411 - 11267588
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    |||||||| |||| ||||||||| |||||||||||||||| ||| ||||| ||||| |||||||| || |||||||| ||||||||||||||||| || |    
11267411 gacatcataacattaagaccttccgcagctaacagaaacaaaaatggggagagagggtccccttggcggagtcctctctcaaaatgaaactcatcagtcg 11267510  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaat 185  Q
    |||||||||| |||| ||| ||||  ||||| || |||||||| |||||||||||| | ||| ||  |||||||||||    
11267511 gacaaccatttactagcactgatgtcgtagctgttgtaacacattccataatccaagagcgcaacaaagacggaaaat 11267588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 29326584 - 29326824
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    |||||||||||||    ||||||||| ||||| || |||| ||| || ||||| |||||||||||||| || || ||||| | || ||||||||| || |    
29326584 gacatcatcacatttgaaccttcagctgctaaaaggaacaaaaacggagaaagcggatccccttgacggagacccctttcgagattaaactcatcagtcg 29326683  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    |||| ||||| ||||||||| |||| || || || |||| ||| |||||||||||| | |||||   | ||||||||||||| |||||||| ||||||||    
29326684 gacacccattaactaacacaaatgccgtcgccgtagtaatacattccataatccaagaccgccaaacacacggaaaattcatcttaatcataacctcatc 29326783  T
208 taagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
     | ||| | |||||| || || |||||||| ||||||||||    
29326784 aatgtagccccaatcaacagaatcataagctttttcaaaat 29326824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 248
Target Start/End: Complemental strand, 22112963 - 22112754
Alignment:
38 aacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccattcactaacacagatgctgtag 137  Q
    |||||||||| ||||||||| ||||| ||||||||||| |  ||||||||||||  |||||| || || ||||| ||||| || ||||| || | ||| |    
22112963 aacagaaacaaaaaaggggagagagggtccccttgacgcaagcctctttcaaaacaaaactcgtctgtcggacacccatttaccaacactgaagttgttg 22112864  T
138 cagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatctaagtaacaccaatccaccgagtcataagc 237  Q
    | || || || ||||||||||||||  ||||||| | | |  | ||||||||||||  |||||| ||||| | ||| | ||||||||||||||| || ||    
22112863 ctgtcgttacgcactccataatccaggaacgcca-taatatcggaaattcattttagacatcacttcatcaaggtacccccaatccaccgagtcgtatgc 22112765  T
238 cttttcaaaat 248  Q
    ||| |||||||    
22112764 cttctcaaaat 22112754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 41767739 - 41767686
Alignment:
25 accttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaag 78  Q
    ||||||||| || |||||||| | ||||||||| ||||| ||||||||||||||    
41767739 accttcagctgccaacagaaataaaaaaggggagagagggtccccttgacgaag 41767686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 38358770 - 38358846
Alignment:
26 ccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatc 102  Q
    |||||||| |||| || ||||| ||| ||||| ||||||||||| ||||| |  ||||| | |||||||||||||||    
38358770 ccttcagccgctagcaaaaacaaaaagggggacagaggatccccctgacgtaaacctctctgaaaatgaaactcatc 38358846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 223564 - 223335
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    ||||||||||||| || ||||||||||||||||||||||| ||| || ||||||||||||||||||||||| ||||| ||||  | ||||||||| || |    
223564 gacatcatcacatgaaaaccttcagcagctaacagaaacaaaaacggagaaagaggatccccttgacgaaggcctctctcaagcttaaactcatcagtag 223465  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    |||| ||||| |||||||| || |   | || || || |||||||||||||||||| | |||||   |   |||||||||||||||| ||||||||| ||    
223464 gacatccattgactaacactgaagtcatggccgttgtgacacactccataatccaagatcgccataaacgtggaaaattcattttaaccatcacctcctc 223365  T
208 taagtaacaccaatccaccgagtcataagc 237  Q
    |||||||| |||||| || || ||||||||    
223364 taagtaaccccaatcaactgaatcataagc 223335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 57236 - 56997
Alignment:
9 acatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttgg 108  Q
    |||||||||||| |||||||||| ||||||||| ||||| ||| || |||||||| ||||||||||| || ||||| ||||||||||||||||| || ||    
57236 acatcatcacattaagaccttcaacagctaacaaaaacaaaaacggagaaagagggtccccttgacggaggcctctctcaaaatgaaactcatcagtcgg 57137  T
109 acaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatct 208  Q
     |||||||| |||||||| ||||  |||||  | |||||||||||||||||| ||   | ||||  |  | ||||||||||||||  ||| |||||||||    
57136 gcaaccatttactaacactgatgtcgtagccattgtaacacactccataatcgaagtgcaccacagacgcagaaaattcattttagccattacctcatct 57037  T
209 aagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
    | ||| | ||||||||| || ||||| || ||||||||||    
57036 aggtatctccaatccacggaatcatacgctttttcaaaat 56997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 10800516 - 10800276
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    |||||||||||||  | ||||||||| ||||| || |||| ||| || ||||| |||||||||||||| || || ||||| | || ||||||||| || |    
10800516 gacatcatcacatttaaaccttcagctgctaaaaggaacaaaaacggagaaagcggatccccttgacggagacccctttcgagattaaactcatcagtcg 10800417  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 207  Q
    |||| ||||| |||||||||||||  || || || |||| ||| |||||||||||| | ||| |   | ||||||||||||| |||||||| ||||||||    
10800416 gacacccattaactaacacagatgtcgtcgccgttgtaatacattccataatccaagaccgctaaacacacggaaaattcatcttaatcataacctcatc 10800317  T
208 taagtaacaccaatccaccgagtcataagccttttcaaaat 248  Q
     | ||||| |||||| || || |||||||| ||||||||||    
10800316 aatgtaaccccaatcaacagaatcataagctttttcaaaat 10800276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 36493693 - 36493781
Alignment:
35 gctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccattcactaa 123  Q
    ||||||||||| |||||||||||||||||||| ||||| || |  || || || ||| |||||||||| ||||| | |||||| |||||    
36493693 gctaacagaaaaagaaaaggggaaagaggatcaccttggcgtaaccccctctctaaaggaaactcatcagttgggctaccattaactaa 36493781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 16374761 - 16374720
Alignment:
205 atctaagtaacaccaatccaccgagtcataagccttttcaaa 246  Q
    ||||||||||| |||||||||||| ||||||| |||||||||    
16374761 atctaagtaaccccaatccaccgaatcataagtcttttcaaa 16374720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 32926 - 33164
Alignment:
8 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 107  Q
    |||||||| |||| |||||| || || || || |||||||| ||||| || |||||||||||||||||||| | ||| | ||||  ||||||||  || |    
32926 gacatcataacattaagaccctccgccgccaagagaaacaggaaaggagagagaggatccccttgacgaagacttctctaaaaaaaaaactcatttgtcg 33025  T
108 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttaga-cggaaaattcattttaatcatcacctcat 206  Q
    | |  ||||| || ||||| || | ||| |  || || |||||||||||||||||| | ||||| | | | ||||||||||||||||  |||||||||||    
33026 ggctcccattaaccaacaccgaagttgttgttgtcgtgacacactccataatccaagagcgcca-taacaccggaaaattcattttagacatcacctcat 33124  T
207 ctaagtaacaccaatccaccgagtcataagccttttcaaa 246  Q
    | | ||||| |||||||||  | ||||| ||||| |||||    
33125 caaggtaaccccaatccacataatcatacgccttctcaaa 33164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 1787 - 1747
Alignment:
32 gcagctaacagaaacagaaaaggggaaagaggatccccttg 72  Q
    |||||||||||||| ||||||||||| |||||||| |||||    
1787 gcagctaacagaaaaagaaaaggggagagaggatctccttg 1747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 27415 - 27455
Alignment:
32 gcagctaacagaaacagaaaaggggaaagaggatccccttg 72  Q
    |||||||||||||| ||||||||||| |||||||| |||||    
27415 gcagctaacagaaaaagaaaaggggagagaggatctccttg 27455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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