View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6492_low_12 (Length: 239)

Name: NF6492_low_12
Description: NF6492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6492_low_12
NF6492_low_12
[»] scaffold0010 (1 HSPs)
scaffold0010 (11-239)||(143102-143330)
[»] chr7 (2 HSPs)
chr7 (11-239)||(16067944-16068172)
chr7 (26-125)||(9692989-9693088)
[»] scaffold0408 (1 HSPs)
scaffold0408 (11-232)||(14984-15205)
[»] chr6 (3 HSPs)
chr6 (11-232)||(14746549-14746770)
chr6 (68-235)||(22395349-22395516)
chr6 (11-125)||(19545145-19545254)
[»] chr5 (6 HSPs)
chr5 (11-239)||(25791827-25792055)
chr5 (73-239)||(25756189-25756355)
chr5 (110-239)||(19020257-19020385)
chr5 (37-125)||(32948837-32948924)
chr5 (26-79)||(14137964-14138017)
chr5 (26-79)||(23909181-23909234)
[»] scaffold1043 (1 HSPs)
scaffold1043 (11-239)||(402-631)
[»] scaffold0061 (2 HSPs)
scaffold0061 (110-239)||(16551-16680)
scaffold0061 (110-239)||(25609-25738)
[»] chr4 (10 HSPs)
chr4 (11-239)||(17419480-17419704)
chr4 (11-124)||(19727534-19727647)
chr4 (11-134)||(12230807-12230930)
chr4 (159-239)||(19727458-19727538)
chr4 (11-125)||(13268018-13268132)
chr4 (11-125)||(18554721-18554830)
chr4 (26-125)||(13559366-13559465)
chr4 (11-125)||(15870947-15871061)
chr4 (58-125)||(15888522-15888589)
chr4 (27-63)||(13235248-13235284)
[»] chr2 (4 HSPs)
chr2 (11-125)||(29718097-29718211)
chr2 (49-124)||(18985275-18985350)
chr2 (30-125)||(26861212-26861307)
chr2 (161-239)||(22521725-22521804)
[»] chr3 (7 HSPs)
chr3 (11-125)||(21977104-21977218)
chr3 (11-125)||(21999535-21999649)
chr3 (11-125)||(19186781-19186895)
chr3 (37-121)||(10302744-10302828)
chr3 (13-125)||(22161732-22161844)
chr3 (26-125)||(10341070-10341169)
chr3 (58-120)||(16357825-16357886)
[»] scaffold0364 (1 HSPs)
scaffold0364 (37-125)||(14588-14676)
[»] scaffold0290 (1 HSPs)
scaffold0290 (26-122)||(11838-11934)
[»] scaffold0118 (1 HSPs)
scaffold0118 (11-115)||(11955-12059)
[»] scaffold0385 (1 HSPs)
scaffold0385 (11-125)||(16144-16258)
[»] chr8 (3 HSPs)
chr8 (11-125)||(10454072-10454186)
chr8 (14-71)||(17861384-17861441)
chr8 (11-63)||(1683229-1683281)
[»] chr1 (1 HSPs)
chr1 (11-125)||(21496562-21496675)
[»] scaffold0207 (1 HSPs)
scaffold0207 (37-125)||(739-827)


Alignment Details
Target: scaffold0010 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 143102 - 143330
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||  || |||||||||||||||||||||| |||    
T  143102 catcatcaatctctcatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccttcccatcatagattaagataccataaagtgaaaa 143201  T
Q  111 gattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacatcgtaagctggaacaatcactacatgtcatct 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  143202 gattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacaacgtaagctggaacaatcactacttgtcatct 143301  T
Q  211 aaagaataacatcaatgcttattcatctc 239  Q
    ||||||| |||||||||||||||||||||    
T  143302 aaagaatgacatcaatgcttattcatctc 143330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 16068172 - 16067944
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||| ||||||    
T  16068172 catcatcattttctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 16068073  T
Q  111 gattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacatcgtaagctggaacaatcactacatgtcatct 210  Q
    ||||| |||||||||||||||| ||||| || ||||||||||||||||||||||||| |||||||||||  |||| ||||||| ||||||| ||||||||    
T  16068072 gattctcccccttacatctaatttatccccttgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatct 16067973  T
Q  211 aaagaataacatcaatgcttattcatctc 239  Q
    |||||||||||||||||||||||||||||    
T  16067972 aaagaataacatcaatgcttattcatctc 16067944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 9693088 - 9692989
Alignment:
Q  26 atcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac 125  Q
    |||||| ||| ||||||||||  |||||| | ||||||||||||||||||||||  || |||||||||||||  |||||||||||||||| || ||||||    
T  9693088 atcaaacttctcatcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagatactctaaagtgcaaagattctcctccttac 9692989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 14984 - 15205
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||| ||   || |||||||||||||| || ||||||||    
T  14984 catcatcattctctcataaaaattcacatcataacagtaacaacattttaaaatttaagtcaaccttctcctcatagattaagataccctatagtgcaaa 15083  T
Q  111 gattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacatcgtaagctggaacaatcactacatgtcatct 210  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || | ||||||||||| |||||||| ||||||||    
T  15084 gattctcccccttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatcttcaacataagctggaaccatcactacttgtcatct 15183  T
Q  211 aaagaataacatcaatgcttat 232  Q
    ||||||||||||||||||||||    
T  15184 aaagaataacatcaatgcttat 15205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 14746549 - 14746770
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||| ||   || |||||||||||||| || ||||||||    
T  14746549 catcatcattctctcataaaaattcacatcataacagtaacaacattttaaaatttaagtcaaccttctcctcatagattaagataccctatagtgcaaa 14746648  T
Q  111 gattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacatcgtaagctggaacaatcactacatgtcatct 210  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || | ||||||||||| |||||||| ||||||||    
T  14746649 gattctcccccttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatcttcaacataagctggaaccatcactacttgtcatct 14746748  T
Q  211 aaagaataacatcaatgcttat 232  Q
    ||||||||||||||||||||||    
T  14746749 aaagaataacatcaatgcttat 14746770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 68 - 235
Target Start/End: Complemental strand, 22395516 - 22395349
Alignment:
Q  68 agacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttacatctaatctatccactcgttggcctaagatactccttaagag 167  Q
    ||||||||||||  || || ||||||||||| ||||||||||||| || |||||||||||| ||| ||||| ||| ||||||||||||| |||||| |||    
T  22395516 agacaaccctcccatcatatattaagataccctaaagtgcaaagactctcccccttacatccaatttatcccctcattggcctaagatattccttatgag 22395417  T
Q  168 cgtcatctacatcgtaagctggaacaatcactacatgtcatctaaagaataacatcaatgcttattca 235  Q
    || |||||||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  22395416 cggcatctacaacataagctggaaccatcactacttgtcatctaaagaataacatcaatgcttattca 22395349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 19545254 - 19545145
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||| | | |||||||||||||| ||||||| |||||||| ||||||     |||||||||| | || |||||||||||||| |||||||||||    
T  19545254 catcatcattttctcatcaaaattcacattataacagcaacaacatattaaaa-----gacaaccctcatatcatagattaagataccctaaagtgcaaa 19545160  T
Q  111 gattcacccccttac 125  Q
    ||||| |||||||||    
T  19545159 gattctcccccttac 19545145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 25791827 - 25792055
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| ||||    
T  25791827 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagaaaaccctcctgtcatagattaagataccctaaagttcaaa 25791926  T
Q  111 gattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacatcgtaagctggaacaatcactacatgtcatct 210  Q
    ||||| ||| |||||||||||| | ||| ||||||| |||||||||||||||||||||||||||||||   |||||| |||| | |||||| ||||||||    
T  25791927 gattctccctcttacatctaatttgtcccctcgttgacctaagatactccttaagagcgtcatctacagtataagctcgaaccaccactacttgtcatct 25792026  T
Q  211 aaagaataacatcaatgcttattcatctc 239  Q
    ||||||||| ||||||||||||| |||||    
T  25792027 aaagaataaaatcaatgcttattaatctc 25792055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 73 - 239
Target Start/End: Complemental strand, 25756355 - 25756189
Alignment:
Q  73 accctcctgtcgtagattaagataccataaagtgcaaagattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtca 172  Q
    ||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||||||| | ||| ||||||| |||||||||||||||||||||||||    
T  25756355 accctcctgtcatagattaagataccctaaagtgcaaagattctccctcttacatctaatatgtcccctcgttgacctaagatactccttaagagcgtca 25756256  T
Q  173 tctacatcgtaagctggaacaatcactacatgtcatctaaagaataacatcaatgcttattcatctc 239  Q
    ||||||   |||||| |||| | |||||| ||||||||||||||||| |||||||||||||||||||    
T  25756255 tctacagtataagctcgaaccaccactacttgtcatctaaagaataaaatcaatgcttattcatctc 25756189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 110 - 239
Target Start/End: Original strand, 19020257 - 19020385
Alignment:
Q  110 agattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacatcgtaagctggaacaatcactacat-gtcat 208  Q
    |||||| |||||||||||||||||| |||  || |||||||||||||||||||||||||| |||| ||| |  ||| |||||| |||||||| | |||||    
T  19020257 agattctcccccttacatctaatctctcc--tcattggcctaagatactccttaagagcgccatcaacaacccaagttggaaccatcactactttgtcat 19020354  T
Q  209 ctaaagaataacatcaatgcttattcatctc 239  Q
    ||||| |||||||||||||||||||||||||    
T  19020355 ctaaataataacatcaatgcttattcatctc 19020385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 32948837 - 32948924
Alignment:
Q  37 catcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac 125  Q
    ||||||||||| |||||||| |||||||| |||||||||||||  ||  ||||| ||||||  |||||||||||||||| |||||||||    
T  32948837 catcataacagcaacaacatattaaaattaaagacaaccctcccatc-aagatttagatactctaaagtgcaaagattctcccccttac 32948924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 14137964 - 14138017
Alignment:
Q  26 atcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcc 79  Q
    ||||||||||||| |||||||  |||||||| |||| |||||||||||||||||    
T  14137964 atcaaaattcacagcataacaacaacaacatattaagatttaagacaaccctcc 14138017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 23909181 - 23909234
Alignment:
Q  26 atcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcc 79  Q
    |||||||||| ||||||||||  |||||| | ||||||||||||||||||||||    
T  23909181 atcaaaattctcatcataacaacaacaacttattaaaatttaagacaaccctcc 23909234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 631 - 402
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaa-tttaagacaaccctcctgtcgtagattaagataccataaagtgcaa 109  Q
    |||||||||||| | || |||||||| |||||||||||||||||||||||||| |||||||||||||||   || |||||||||||||  || | |||||    
T  631 catcatcattctctcataaaaattcatatcataacagtaacaacattttaaaaatttaagacaaccctctcatcatagattaagatactctacattgcaa 532  T
Q  110 agattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacatcgtaagctggaacaatcactacatgtcatc 209  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| | ||||||||||  ||| |||| |||||||    
T  531 agattctcccccttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatctacaacataagctggaatcatccctacttgtcatc 432  T
Q  210 taaagaataacatcaatgcttattcatctc 239  Q
    ||||||||||||||||||||||| ||||||    
T  431 taaagaataacatcaatgcttatccatctc 402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 16680 - 16551
Alignment:
Q  110 agattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacatcgtaagctggaacaatcactacatgtcatc 209  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  16680 agattctcccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacaacgtaagctggaacaatcactacttgtcatc 16581  T
Q  210 taaagaataacatcaatgcttattcatctc 239  Q
    ||||||||||||||||||||||||||||||    
T  16580 taaagaataacatcaatgcttattcatctc 16551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 25738 - 25609
Alignment:
Q  110 agattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacatcgtaagctggaacaatcactacatgtcatc 209  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  25738 agattctcccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacaacgtaagctggaacaatcactacttgtcatc 25639  T
Q  210 taaagaataacatcaatgcttattcatctc 239  Q
    ||||||||||||||||||||||||||||||    
T  25638 taaagaataacatcaatgcttattcatctc 25609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 17419480 - 17419704
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| ||||  || |  || |||||||||||||| |||||||||||    
T  17419480 catcatcattctctcatcaaaattcacatcataatagtaacaacattttaaaatttaaaacaaatcttccttcatagattaagataccctaaagtgcaaa 17419579  T
Q  111 gattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacatcgtaagctggaacaatcacta-catgtcatc 209  Q
    |||||  ||||||||     |||||||||||||||||||||||||||||||||||||   |||||||| | ||| ||||||| ||||||| | ||||||     
T  17419580 gattcttccccttac-----atctatccactcgttggcctaagatactccttaagagtaccatctacaacataaactggaaccatcactaccttgtcata 17419674  T
Q  210 taaagaataacatcaatgcttattcatctc 239  Q
    ||||||||||||||||||||||||||||||    
T  17419675 taaagaataacatcaatgcttattcatctc 17419704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 19727647 - 19727534
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||    
T  19727647 catcatcattctctcgtcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcccgtcatagattaagataccctaaagtgcaaa 19727548  T
Q  111 gattcaccccctta 124  Q
    ||||| || |||||    
T  19727547 gattctccgcctta 19727534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 12230807 - 12230930
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||| | ||||||||||||||||||| || |||||||| ||||||||||||||||||||||  |  |||||||||||||| |||||||||||    
T  12230807 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagacaaccctcccataatagattaagataccctaaagtgcaaa 12230906  T
Q  111 gattcacccccttacatctaatct 134  Q
    ||||  ||||||||| || |||||    
T  12230907 gattatcccccttacctcgaatct 12230930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 19727538 - 19727458
Alignment:
Q  159 ccttaagagcgtcatctacatcgtaagctggaacaatcactacatgtcatctaaagaataacatcaatgcttattcatctc 239  Q
    ||||||||| |||||||||| | |||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  19727538 ccttaagagtgtcatctacaacataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctc 19727458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 13268018 - 13268132
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||| |  ||||||||||||||||||||  |||||  | ||||||||||||| ||||||||  || || ||||||||||| |||||||||||    
T  13268018 catcatcattctctcgtcaaaattcacatcataacaacaacaatgtattaaaatttaagaaaaccctcccatcataaattaagataccctaaagtgcaaa 13268117  T
Q  111 gattcacccccttac 125  Q
    ||||| |||||||||    
T  13268118 gattctcccccttac 13268132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 18554830 - 18554721
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||| | | |||||||||||||||||||||| |||||||| ||||||     |||||||||| | || |||||||||||||| |||||||||||    
T  18554830 catcatcattttctcatcaaaattcacatcataacagcaacaacatattaaaa-----gacaaccctcatatcatagattaagataccctaaagtgcaaa 18554736  T
Q  111 gattcacccccttac 125  Q
    ||||| |||||||||    
T  18554735 gattctcccccttac 18554721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 13559465 - 13559366
Alignment:
Q  26 atcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac 125  Q
    |||||| ||| ||||||||||  |||||| | ||||||||||||||||||||||  || |||||||||||||  |||||||||||||||| || ||||||    
T  13559465 atcaaacttctcatcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagatactctaaagtgcaaagattctcctccttac 13559366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 15871061 - 15870947
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||  | ||||||||| |||||||||||| || |     ||||||||||||||||||||||  || || ||||||||||| |||||||||||    
T  15871061 catcatcattcactcatcaaaatttacatcataacagaaaaagtgcattaaaatttaagacaaccctcccatcataaattaagataccctaaagtgcaaa 15870962  T
Q  111 gattcacccccttac 125  Q
    ||||| |||||||||    
T  15870961 gattctcccccttac 15870947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 15888589 - 15888522
Alignment:
Q  58 ttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac 125  Q
    ||||||||||||||||||||||  || || ||| ||||| | |||||||||||||||| ||| |||||    
T  15888589 ttaaaatttaagacaaccctcccatcataaatttagatatcctaaagtgcaaagattctccctcttac 15888522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 13235248 - 13235284
Alignment:
Q  27 tcaaaattcacatcataacagtaacaacattttaaaa 63  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  13235248 tcaaaattcacatcataacactaacaacatattaaaa 13235284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 29718211 - 29718097
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||| | |||||||||||||||||||||  |||||||| |||||||||||||||||||| |  || |||||||||||||  |||||||||||    
T  29718211 catcatcattctctcatcaaaattcacatcataacaacaacaacatattaaaatttaagacaacccttccatcatagattaagatactctaaagtgcaaa 29718112  T
Q  111 gattcacccccttac 125  Q
     |||| |||||||||    
T  29718111 tattctcccccttac 29718097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 18985350 - 18985275
Alignment:
Q  49 aacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcaccccctta 124  Q
    |||||||| ||||||||||| ||||||||||| || ||||||| |||||| ||| |||||||||||| ||||||||    
T  18985350 aacaacatattaaaatttaatacaaccctcctatcatagattacgataccctaatgtgcaaagattctccccctta 18985275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 26861307 - 26861212
Alignment:
Q  30 aaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac 125  Q
    ||||| ||| |||||||| || || || ||||||||||| |||||||| |  || | |||||||||||| ||||||||||||| || |||||||||    
T  26861307 aaattaacaccataacagcaataatatattaaaatttaatacaacccttccatcatggattaagataccctaaagtgcaaagaatctcccccttac 26861212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 22521725 - 22521804
Alignment:
Q  161 ttaagagcgtcatctacatcgtaagctggaacaatcactacat-gtcatctaaagaataacatcaatgcttattcatctc 239  Q
    ||||||||| |||||||| |  ||| || ||| |||||||| | |||||||||| ||||||||||||| |||||||||||    
T  22521725 ttaagagcgccatctacaacacaagttgtaaccatcactactttgtcatctaaaaaataacatcaatggttattcatctc 22521804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 21977104 - 21977218
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||  | |||||||||||||||||||||| |||||  | |||||||||||||||||||| |  || || ||||||||||| |||||||||||    
T  21977104 catcatcattcactcatcaaaattcacatcataacagcaacaatgtattaaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaa 21977203  T
Q  111 gattcacccccttac 125  Q
    |||||  ||||||||    
T  21977204 gattctaccccttac 21977218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 21999535 - 21999649
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||  | |||||||||||||||||||||| |||||  | |||||||||||||||||||| |  || || ||||||||||| |||||||||||    
T  21999535 catcatcattcactcatcaaaattcacatcataacagcaacaatgtattaaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaa 21999634  T
Q  111 gattcacccccttac 125  Q
    |||||  ||||||||    
T  21999635 gattctaccccttac 21999649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 19186781 - 19186895
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||  | |||||||||||||||||||||| |||||  | |||||||||||||| |||| ||  || || ||||||||||| |||||||||||    
T  19186781 catcatcattcactgatcaaaattcacatcataacagcaacaatgtattaaaatttaagacgacccacccatcataaattaagataccctaaagtgcaaa 19186880  T
Q  111 gattcacccccttac 125  Q
    ||||| || ||||||    
T  19186881 gattctcctccttac 19186895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 10302744 - 10302828
Alignment:
Q  37 catcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcaccccc 121  Q
    ||||||||||  |||||| | ||||||||||||||||||||||  || |||||||||||||| |||||||||||||||| |||||    
T  10302744 catcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctccccc 10302828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 22161732 - 22161844
Alignment:
Q  13 tcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaaga 112  Q
    |||||||||  | |||||||||||||||||||||| |||||  | || ||||||||||||||||| |  || || ||||||||||| |||||||||||||    
T  22161732 tcatcattcactcatcaaaattcacatcataacagcaacaatgtattcaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaaga 22161831  T
Q  113 ttcacccccttac 125  Q
    |||  ||||||||    
T  22161832 ttctaccccttac 22161844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 10341070 - 10341169
Alignment:
Q  26 atcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac 125  Q
    |||||||||| ||||||||||  |||||| | |||||||||||||||| |||||   | |||||||||||||| ||||||||||| |||| |||||||||    
T  10341070 atcaaaattctcatcataacatcaacaacttattaaaatttaagacaatcctcccaccatagattaagataccctaaagtgcaaatattctcccccttac 10341169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 16357886 - 16357825
Alignment:
Q  58 ttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccc 120  Q
    |||||||||||||||||| |||  || || ||||||||||| |||||||||||||||| ||||    
T  16357886 ttaaaatttaagacaacc-tcccatcataaattaagataccctaaagtgcaaagattctcccc 16357825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 14588 - 14676
Alignment:
Q  37 catcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac 125  Q
    ||||||||||| |||||||| || ||||| |||||||||||||  || |||||||||||||| |||||||||||||||| |||||||||    
T  14588 catcataacagcaacaacatattgaaattaaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctcccccttac 14676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 11934 - 11838
Alignment:
Q  26 atcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcaccccct 122  Q
    ||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||| || || |||| || ||| |||||||||||||||| ||||||    
T  11934 atcaaaatttacatcataacagcaacaacatattaaaatttaatacaaccctcctatcataaattacgacaccctaaagtgcaaagattctccccct 11838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 11955 - 12059
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||| | |||||||||||||||||||||| |||||    ||||||||||||||||||||||  || || ||||||||||| |||||||||||    
T  11955 catcatcattctctcatcaaaattcacatcataacagcaacaatgaattaaaatttaagacaaccctcccatcataaattaagataccctaaagtgcaaa 12054  T
Q  111 gattc 115  Q
     ||||    
T  12055 tattc 12059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 16144 - 16258
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||  | ||||||||||||||||||| || |||||  | |||||||||||||| |||||||  || || ||||||||||| |||||| ||||    
T  16144 catcatcattcactcatcaaaattcacatcataaaagcaacaatgtattaaaatttaagacgaccctcccatcataaattaagataccctaaagtacaaa 16243  T
Q  111 gattcacccccttac 125  Q
    ||||| |||||||||    
T  16244 gattctcccccttac 16258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 10454186 - 10454072
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||| | ||||||||||||| |||||||| || ||||| ||||||| || |||||||| ||  || |||||||||||||| |||||| ||||    
T  10454186 catcatcattctctcatcaaaattcacaccataacagcaaaaacatattaaaatataggacaacccacccatcatagattaagataccctaaagttcaaa 10454087  T
Q  111 gattcacccccttac 125  Q
    |||||  ||||||||    
T  10454086 gattcttccccttac 10454072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 17861441 - 17861384
Alignment:
Q  14 catcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagac 71  Q
    ||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||    
T  17861441 catcattctctcatcaaaattcacgtcataacagtaacaacattttaaaatttaagac 17861384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 1683229 - 1683281
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaa 63  Q
    |||||||| ||| | |||||||||||||||||||| | |||||||| ||||||    
T  1683229 catcatcagtctctcatcaaaattcacatcataaccgcaacaacatattaaaa 1683281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 21496562 - 21496675
Alignment:
Q  11 catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa 110  Q
    |||||||||||| | || || ||||| ||||||  || |||||||| || |||||||||| ||||||||   | |||||||||||||| |||||||||||    
T  21496562 catcatcattctctcataaatattcatatcatattagaaacaacatatttaaatttaagataaccctccca-catagattaagataccctaaagtgcaaa 21496660  T
Q  111 gattcacccccttac 125  Q
    ||||| |||||||||    
T  21496661 gattctcccccttac 21496675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 827 - 739
Alignment:
Q  37 catcataacagtaacaacatt-ttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac 125  Q
    ||||||||||| ||||||||  |||||||| |||||||||||||  || |||||||||||||| |||||||||||| ||| |||||||||    
T  827 catcataacagcaacaacataattaaaattaaagacaaccctccaatcatagattaagataccctaaagtgcaaag-ttctcccccttac 739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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