View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6492_low_5 (Length: 418)
Name: NF6492_low_5
Description: NF6492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6492_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 43 - 416
Target Start/End: Original strand, 31788060 - 31788431
Alignment:
| Q |
43 |
gataaattacacaagctagtgagttagattagtttcatttggtgacatgtaacaatgttatgtgttggacacaaaaatatcaaaagatatgtctcataat |
142 |
Q |
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| T |
31788060 |
gataaattacacaagccagcgagttagattagtttcattcggtgacatgtaacaatgttatgtgttggacacaaaaatatcaaaagatatgccccataat |
31788159 |
T |
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| Q |
143 |
cctaatttaactgataaaaatatcaaaactgttaaactagacattgtgactggagttcaaactctgacatctctattttgtatatgaattgcgatgactt |
242 |
Q |
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| T |
31788160 |
cctaacttaaccaataaaaatatcaaaattattagacta--cgttatgaccggagttcaaaccctgacacctccattttatatctgaattacgatgattt |
31788257 |
T |
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| Q |
243 |
tgctatttaatctatctaaaaaatgtaactagttatatacaaagactaattagttacctgtgtgggtccccccactaccagtgtgggttccatatcctgt |
342 |
Q |
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|||||||| ||||| |||||||||||| |||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31788258 |
tgctatttcgtctatataaaaaatgtaaatagttagatagaaagactaattagttacctgtgtgggtccctccactaccagtgtgggttccatatcctgt |
31788357 |
T |
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| Q |
343 |
gccagtacctgtgttgctcccaaaacctgtggtttgatcaactccaactccatgatgttgttgatgatgtccat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31788358 |
gccagtacctgtgttgctcccaaaacctgtggtttgatcaactccaactccatgatgttgttgatgatgtccat |
31788431 |
T |
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