View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6492_low_9 (Length: 297)
Name: NF6492_low_9
Description: NF6492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6492_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 3706172 - 3705918
Alignment:
| Q |
7 |
acatcatcaaaaagaccttgtgatacagtataattgaatgatgatgttaaacttttaaacactttcaacactgatttgagagggttatgttagcgatctt |
106 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3706172 |
acatcataacaaagaccttgtgatacagtataattgaatgatgatgttaaacttttaaacactttcaacactgatttgagaggcttatgttagcgatctt |
3706073 |
T |
|
| Q |
107 |
accattaaaattattgagctctaacaacttacaaaattataagtggagttaaatacattttaacagtgaaatcattaatataaccatctcatattttgtt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3706072 |
accattaaaattattgagctctaacaacttacaaaattataagtggagttaaatacattttaacagtgaaatcattaatataaccatctcatattttgtt |
3705973 |
T |
|
| Q |
207 |
tcatacatgagagaatcaatgtggtagtggcaaattaatggttagaatttcattg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3705972 |
tcatacatgagagaatcaatgtggtagtggcaaattaatggttagaatttcattg |
3705918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University