View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6493_high_4 (Length: 293)
Name: NF6493_high_4
Description: NF6493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6493_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 6 - 278
Target Start/End: Original strand, 5281734 - 5282006
Alignment:
| Q |
6 |
agtgagatgaaaaccatgagagtcttgaggatcaggcaaaacctcattttcgtaacctcctcttttttcactatctcgattcaactcagtaactttgtct |
105 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5281734 |
agtgagatgaaaaccatgagagtcttgaggattaggcaaaacctcattttcgtaacctcctctattttcactatctcgattcaactcagtaactttgtct |
5281833 |
T |
|
| Q |
106 |
ttatgagcactcacaagtagttcaaaggctgttccagatgttaaaatattctcataactacctgattgaataactcttccaccccccattacctagaatt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5281834 |
ttatgagcactcacaagtagttcaaaggctgttccagatgttaaaatattctcataactacctgattgaataactcttccaccctccattacctagaatt |
5281933 |
T |
|
| Q |
206 |
tgagttcatcatgttaaattatgttcagatataatataataaacatcaaaatgaaatactttaccaagatagt |
278 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5281934 |
tgagttcatcatgttaaattatgttcagatataatataataaacatcaaaatgaaatactttaccaagatagt |
5282006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 6 - 278
Target Start/End: Original strand, 14948971 - 14949241
Alignment:
| Q |
6 |
agtgagatgaaaaccatgagagtcttgaggatcaggcaaaacctcattttcgtaacctcctcttttttcactatctcgattcaactcagtaactttgtct |
105 |
Q |
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|||||||| |||||||| |||||||||||| || ||||||||||||||| ||||||| | |||||||||||| ||||||||||| ||| | ||||| |
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| T |
14948971 |
agtgagatataaaccatgcaagtcttgaggattagacaaaacctcattttcagaacctccattattttcactatcttgattcaactcattaattgtgtct |
14949070 |
T |
|
| Q |
106 |
ttatgagcactcacaagtagttcaaaggctgttccagatgttaaaatattctcataactacctgattgaataactcttccaccccccattacctagaatt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| ||||| | ||||||||||||||| |
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| T |
14949071 |
ttatgagcactcacaagtagttcaaaggctgttccagattttaggagattctcataactacctgattgaataacttttccatcgtccattacctagaatt |
14949170 |
T |
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| Q |
206 |
tgagttcatcatgttaaattatgttcagatataatataataaacatcaaaatgaaatactttaccaagatagt |
278 |
Q |
| |
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||||||||| || || | |||||||||| ||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
14949171 |
tgagttcatgatatt--agtatgttcagaaggaatataatagacatccaaatgaaatactttaccaagatagt |
14949241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 6 - 278
Target Start/End: Complemental strand, 5307615 - 5307341
Alignment:
| Q |
6 |
agtgagatgaaaaccatgagagtcttgaggatcaggcaaaacctcattttcgtaacctcctcttttttcactatctcgattcaactcagtaactttgtct |
105 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| || ||||||||||||||| || ||| | | |||||| || || ||||||||||| ||| | |||| |
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| T |
5307615 |
agtgagaggaaaaccatgatagtcttgaggattagacaaaacctcattttcagaatctcttttattttcattaacttgattcaactcattaattgtgtcc |
5307516 |
T |
|
| Q |
106 |
ttatgagcactcacaagtagttcaaaggctgttccagatgttaaaatattctcataactacctgattgaataactcttccaccccccattacctagaatt |
205 |
Q |
| |
|
||||| || |||||||| ||||||||||| |||||| ||| | | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5307515 |
ttatgtgctttcacaagttgttcaaaggcttttccagttgtcaggagattctcataactacctgattgaataactcttccaccctccattacctagaatt |
5307416 |
T |
|
| Q |
206 |
tgagttcatcatgttaaattatgttcagatataatataataaa--catcaaaatgaaatactttaccaagatagt |
278 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||| |||||| | ||| |||| ||||| |||||||||||||| |
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| T |
5307415 |
tgagttcatcatgttaaacaatgttcaaatgtaaaataatacaggaatccaaataaaatattttaccaagatagt |
5307341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 104 - 278
Target Start/End: Complemental strand, 15126307 - 15126134
Alignment:
| Q |
104 |
ctttatgagcactcacaagtagttcaaaggctgttccagatgttaaaatattctcataactacctgattgaataactcttccaccccccattacctagaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| ||||| || ||||||||||||| |
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| T |
15126307 |
ctttatgagcactcacaagtagttcaaaggctgttccagattttaggagattctcataactacctgattgaataacttttccatcctccattacctagaa |
15126208 |
T |
|
| Q |
204 |
tttgagttcatcatgttaaattatgttcagatataatataataaacatcaaaatgaaatactttaccaagatagt |
278 |
Q |
| |
|
|||||||||||||| || | ||| ||||||| |||||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
15126207 |
tttgagttcatcatatt-agttacattcagatgtaatataatagacatccaaatgaaatactttaccaagatagt |
15126134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 42 - 278
Target Start/End: Original strand, 5289769 - 5290007
Alignment:
| Q |
42 |
caaaacctcattttcgtaacctcctcttttttcactatctcgattcaactcagtaactttgtctttatgagcactcacaagtagttcaaaggctgttcca |
141 |
Q |
| |
|
||||||||||||||| ||||| || | ||||| |||| ||||||||||||||| | |||| ||||| || ||||||||| ||||||||||||||||| |
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| T |
5289769 |
caaaacctcattttcagaaccttctttattttcctgatcttgattcaactcagtaattgtgtccttatgtgctctcacaagttgttcaaaggctgttcca |
5289868 |
T |
|
| Q |
142 |
gatgttaaaatattctcataactacctgattgaataactcttccaccccccattacctagaatttgagttcatcatgttaaattatgttcagatataata |
241 |
Q |
| |
|
| ||| | | |||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| ||||||| ||||||| || ||||| |
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| T |
5289869 |
gctgtcaggagattctcataactacctgattgaataacttttccaccctccatgacctagaatttgagttcatcctgttaaacaatgttcaaatgtaata |
5289968 |
T |
|
| Q |
242 |
taataaa--catcaaaatgaaatactttaccaagatagt |
278 |
Q |
| |
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||||| | ||| |||||||||| |||||||||||||| |
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| T |
5289969 |
taatacaggaatccaaatgaaatattttaccaagatagt |
5290007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 11833894 - 11833829
Alignment:
| Q |
213 |
atcatgttaaattatgttcagatataatataataaacatcaaaatgaaatactttaccaagatagt |
278 |
Q |
| |
|
||||||||||| |||||||| || |||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
11833894 |
atcatgttaaactatgttcaaatgcaatataataagcatcaaaatgaaataatttaccaagatagt |
11833829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 5314523 - 5314403
Alignment:
| Q |
90 |
ctcagtaactttgtctttatgagcactcacaagtagttcaaaggctgttccagatgttaaaatattctcataactacctgattgaataactcttccaccc |
189 |
Q |
| |
|
|||||||||| |||||||||| || |||||||| ||||||| ||| |||| | | || | ||||| |||||| || |||||||||||| ||||| || |
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|
| T |
5314523 |
ctcagtaactatgtctttatgggcgttcacaagttcgtcaaaggttgtcccagctttcaagagattctgataactgcccgattgaataacttttccatcc |
5314424 |
T |
|
| Q |
190 |
cccattacctagaatttgagt |
210 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
5314423 |
tccattacctagaatttgagt |
5314403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 15126380 - 15126336
Alignment:
| Q |
7 |
gtgagatgaaaaccatgagagtcttgaggatcaggcaaaacctca |
51 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || |||||||||| |
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|
| T |
15126380 |
gtgagataaaaaccatgagagtcttgaggattagacaaaacctca |
15126336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 204
Target Start/End: Original strand, 31525851 - 31525978
Alignment:
| Q |
77 |
tatctcgattcaactcagtaactttgtctttatgagcactcacaagtagttcaaaggctgttccagatgttaaaatattctcataactacctgattgaat |
176 |
Q |
| |
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||||| ||||||||||||||| | |||||| || || |||||||| ||||||||||||| |||| | ||| | |||||||||||||||||||||||| |
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| T |
31525851 |
tatcttgattcaactcagtaagtgcgtctttgtgcgcgttcacaagttgttcaaaggctgtcccagctattaggagattctcataactacctgattgaat |
31525950 |
T |
|
| Q |
177 |
aactcttccaccccccattacctagaat |
204 |
Q |
| |
|
|||| ||||| || |||||||||||||| |
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|
| T |
31525951 |
aacttttccatcctccattacctagaat |
31525978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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