View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6493_high_5 (Length: 279)

Name: NF6493_high_5
Description: NF6493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6493_high_5
NF6493_high_5
[»] chr5 (11 HSPs)
chr5 (74-261)||(34475952-34476139)
chr5 (75-127)||(430514-430566)
chr5 (69-127)||(2566238-2566296)
chr5 (77-127)||(15292168-15292218)
chr5 (77-127)||(32269940-32269990)
chr5 (70-127)||(23023502-23023559)
chr5 (79-127)||(35310364-35310412)
chr5 (26-57)||(34475919-34475950)
chr5 (71-116)||(15506769-15506814)
chr5 (94-127)||(25663175-25663208)
chr5 (69-126)||(37873782-37873839)
[»] chr8 (10 HSPs)
chr8 (12-127)||(38815143-38815258)
chr8 (75-127)||(3187882-3187934)
chr8 (69-121)||(39434573-39434625)
chr8 (74-127)||(4699782-4699835)
chr8 (74-122)||(500153-500201)
chr8 (95-127)||(8882276-8882308)
chr8 (69-125)||(22589481-22589537)
chr8 (26-117)||(4073397-4073488)
chr8 (90-127)||(24451047-24451084)
chr8 (29-113)||(18804479-18804563)
[»] scaffold0009 (1 HSPs)
scaffold0009 (69-127)||(103012-103070)
[»] chr6 (9 HSPs)
chr6 (69-127)||(3137390-3137448)
chr6 (71-127)||(959489-959545)
chr6 (12-127)||(34168770-34168884)
chr6 (69-123)||(7749387-7749441)
chr6 (69-119)||(17249456-17249506)
chr6 (69-127)||(29338222-29338280)
chr6 (89-127)||(32115644-32115682)
chr6 (70-119)||(34554427-34554476)
chr6 (95-127)||(357859-357891)
[»] chr3 (12 HSPs)
chr3 (29-127)||(26772624-26772722)
chr3 (69-127)||(32546701-32546759)
chr3 (42-127)||(13582389-13582474)
chr3 (69-127)||(39583372-39583430)
chr3 (76-125)||(26276528-26276577)
chr3 (75-127)||(53785621-53785673)
chr3 (69-127)||(26856905-26856963)
chr3 (89-127)||(38671023-38671061)
chr3 (10-127)||(44198614-44198731)
chr3 (76-125)||(49017880-49017929)
chr3 (95-123)||(4763939-4763967)
chr3 (68-116)||(5338551-5338599)
[»] chr7 (11 HSPs)
chr7 (76-127)||(48539094-48539145)
chr7 (69-127)||(45613985-45614043)
chr7 (42-122)||(982828-982908)
chr7 (75-127)||(21326981-21327033)
chr7 (59-127)||(28517430-28517498)
chr7 (69-125)||(45003042-45003098)
chr7 (76-127)||(27027773-27027824)
chr7 (77-124)||(38839240-38839287)
chr7 (29-127)||(5825139-5825237)
chr7 (77-127)||(40726623-40726673)
chr7 (69-118)||(32584506-32584555)
[»] chr1 (10 HSPs)
chr1 (20-123)||(30688414-30688517)
chr1 (69-127)||(24177654-24177712)
chr1 (77-127)||(34644480-34644530)
chr1 (76-126)||(45835330-45835380)
chr1 (29-125)||(5453961-5454057)
chr1 (69-124)||(28493477-28493532)
chr1 (75-125)||(2764391-2764441)
chr1 (69-119)||(2898608-2898658)
chr1 (75-115)||(1114023-1114063)
chr1 (14-50)||(10348636-10348672)
[»] chr4 (13 HSPs)
chr4 (69-127)||(39001303-39001361)
chr4 (69-125)||(53619492-53619548)
chr4 (69-127)||(3329902-3329960)
chr4 (77-127)||(4419177-4419227)
chr4 (29-127)||(30940875-30940973)
chr4 (76-125)||(48657060-48657109)
chr4 (12-127)||(26521338-26521452)
chr4 (71-125)||(45661599-45661653)
chr4 (77-127)||(55933603-55933653)
chr4 (94-127)||(16955391-16955424)
chr4 (69-118)||(50464448-50464497)
chr4 (94-126)||(18981682-18981714)
chr4 (75-127)||(50442622-50442674)
[»] chr2 (8 HSPs)
chr2 (71-127)||(13413259-13413315)
chr2 (75-127)||(17344550-17344602)
chr2 (69-127)||(4413209-4413267)
chr2 (69-127)||(9685558-9685616)
chr2 (12-104)||(30602338-30602430)
chr2 (89-124)||(41868054-41868089)
chr2 (69-127)||(18745097-18745155)
chr2 (95-127)||(44686348-44686380)
[»] scaffold0148 (1 HSPs)
scaffold0148 (74-127)||(33161-33214)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 74 - 261
Target Start/End: Original strand, 34475952 - 34476139
Alignment:
Q  74 gcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctaggctcaatattgttcaaaaaatgatgttgatcatatcaaaaataagaa 173  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34475952 gcctttttggacggaaaaaacaatcttcgtaaacacaacattcatggacctaggctcaatattgttcaaaaaatgatgttgatcatatcaaaaataagaa 34476051  T
Q  174 aggaaaaggaaagattaatactaatagaagtagaagggagcagtcagattagagaataggagaaaataatcaaagaagaggtggtgca 261  Q
    ||||||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34476052 aggaaaatgaaagatcaagactaatagaagtagaagggagcagtcagattggagaataggagaaaataatcaaagaagaggtggtgca 34476139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 430514 - 430566
Alignment:
Q  75 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||||| || | || ||||||||||||||||||||||||||||||||||    
T  430514 cctttttggatggcataatcaatcctcgtaaacacaacattcatggacctagg 430566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 2566296 - 2566238
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||| |||||||||| || |||| |||||||||||||||||||||| ||||| |||||    
T  2566296 gctagacctttttggatggcaaaatcaatcctcgtaaacacaacattgatggatctagg 2566238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 15292218 - 15292168
Alignment:
Q  77 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||| || |||| |||||||| |||||||||||||||||||||||||    
T  15292218 tttttggatggcaaaatcaatcctcataaacacaacattcatggacctagg 15292168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 32269990 - 32269940
Alignment:
Q  77 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||| ||  ||| ||||||||||||||||||||||||||||||||||    
T  32269990 tttttggatggcgaaatcaatcctcgtaaacacaacattcatggacctagg 32269940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 23023502 - 23023559
Alignment:
Q  70 ctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||||||||||||| |  |||| ||||| ||||||||||||||||||| ||||||||    
T  23023502 ctaggcctttttggatgacaaaatcaatcttcgtaaacacaacattcatcgacctagg 23023559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 35310364 - 35310412
Alignment:
Q  79 tttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||| || |||| |||| |||||||||||||||||||||||||||||    
T  35310364 tttggatggcaaaaccaattctcgtaaacacaacattcatggacctagg 35310412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 57
Target Start/End: Original strand, 34475919 - 34475950
Alignment:
Q  26 taattacacatgaacggaaggcaagcaggtaa 57  Q
    ||||||||||||||||||||||||||||||||    
T  34475919 taattacacatgaacggaaggcaagcaggtaa 34475950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 15506814 - 15506769
Alignment:
Q  71 taggcctttttggacgggaaaaacaatcctcgtaaacacaacattc 116  Q
    ||||||||||| || || |||| |||||||||||||||||||||||    
T  15506814 taggccttttttgatggtaaaatcaatcctcgtaaacacaacattc 15506769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 25663208 - 25663175
Alignment:
Q  94 caatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||||||||| |||||||||||||||||||    
T  25663208 caatcctcgtaaactcaacattcatggacctagg 25663175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 37873839 - 37873782
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctag 126  Q
    ||||||||||||| ||  | |||| |||||||| |||||||||||||||| |||||||    
T  37873839 gctaggccttttttgatagcaaaatcaatcctcttaaacacaacattcatagacctag 37873782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 38815143 - 38815258
Alignment:
Q  12 tatatatcaatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaa 111  Q
    |||||||||| || |  |||||||||||  |||||||||| || || |||| | |  |||| ||||||||||| || |||| ||||||||||||||||||    
T  38815143 tatatatcaaggattgcttacacatgaatagaaggcaagcgggcaacaagctgcgccgctaagcctttttggatggaaaaaccaatcctcgtaaacacaa 38815242  T
Q  112 cattcatggacctagg 127  Q
    ||||||||||||||||    
T  38815243 cattcatggacctagg 38815258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 3187882 - 3187934
Alignment:
Q  75 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||||| || |||| |||| |||||||||||||||||||||||||||||    
T  3187882 cctttttggatggcaaaaccaattctcgtaaacacaacattcatggacctagg 3187934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 39434573 - 39434625
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatgga 121  Q
    ||||| |||||||||| || |||| ||||||||||||||||||||||||||||    
T  39434573 gctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatgga 39434625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 4699782 - 4699835
Alignment:
Q  74 gcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||||||||| || ||||  |||||| ||||||||||||||||||||||||||    
T  4699782 gcctttttggatggcaaaactaatccttgtaaacacaacattcatggacctagg 4699835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 500153 - 500201
Alignment:
Q  74 gcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggac 122  Q
    ||||||||| | || |||| |||||||||||||||||||||||||||||    
T  500153 gcctttttgaatggtaaaatcaatcctcgtaaacacaacattcatggac 500201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 8882276 - 8882308
Alignment:
Q  95 aatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||||||||||||||||||||||||||||    
T  8882276 aatcctcgtaaacacaacattcatggacctagg 8882308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 22589537 - 22589481
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 125  Q
    ||||| |||||||||| || |||| |||||||||| |||||||||||||| ||||||    
T  22589537 gctagacctttttggatggcaaaaccaatcctcgtgaacacaacattcatagaccta 22589481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 4073397 - 4073488
Alignment:
Q  26 taattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattca 117  Q
    |||||||||||||  ||||||||||| || || |||  |||| |||| || |||||||| |  |||| |||| |||||||||||||||||||    
T  4073397 taattacacatgattggaaggcaagcgggaaacaagttgtgtcgctaagcttttttggatgataaaatcaattctcgtaaacacaacattca 4073488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 24451047 - 24451084
Alignment:
Q  90 aaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  24451047 aaaacaatcatcgtgaacacaacattcatggacctagg 24451084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 18804479 - 18804563
Alignment:
Q  29 ttacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaaca 113  Q
    |||||| ||||  ||||||||||||| || |||| | |  ||||| |||||||||| || |||| ||||||||||||||| ||||    
T  18804479 ttacacttgaatagaaggcaagcaggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacaaaaca 18804563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 103012 - 103070
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  103012 gctagacctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctagg 103070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 3137448 - 3137390
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||| ||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  3137448 gctaagcctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctagg 3137390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 959489 - 959545
Alignment:
Q  71 taggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||||||||| || |  |||| ||||||||||||||||||||||||||||||||||    
T  959489 taggcctttttagatgacaaaatcaatcctcgtaaacacaacattcatggacctagg 959545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 34168770 - 34168884
Alignment:
Q  12 tatatatcaatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaa 111  Q
    ||||||| ||||| ||||||||||||||  |||||||||| ||  | |||  | |  ||||||||||||||||  | |||| |||||||||| |||||||    
T  34168770 tatatataaatgattaattacacatgaatagaaggcaagcgggcgacaagttgcgccgctaggcctttttggatagcaaaaccaatcctcgt-aacacaa 34168868  T
Q  112 cattcatggacctagg 127  Q
    |||||||||| |||||    
T  34168869 cattcatggatctagg 34168884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 7749387 - 7749441
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacc 123  Q
    ||||| |||||| ||| || |||| ||||||||||||||||||||||||||||||    
T  7749387 gctagaccttttaggatggcaaaaccaatcctcgtaaacacaacattcatggacc 7749441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 17249506 - 17249456
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatg 119  Q
    ||||| |||||||||| || |||| ||||||||||||||||||||||||||    
T  17249506 gctagacctttttggatggcaaaaccaatcctcgtaaacacaacattcatg 17249456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 29338280 - 29338222
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||| |||||||  | |||| ||||||| ||||||||||||||||||||||||||    
T  29338280 gctaggccattttggatagaaaaatcaatccttgtaaacacaacattcatggacctagg 29338222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 32115644 - 32115682
Alignment:
Q  89 aaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  32115644 aaaatcaatcatcgtaaacacaacattcatggacctagg 32115682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 34554476 - 34554427
Alignment:
Q  70 ctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatg 119  Q
    ||||||||||||||| |  |||| |||||||||||||||||| |||||||    
T  34554476 ctaggcctttttggatgacaaaatcaatcctcgtaaacacaaaattcatg 34554427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 357891 - 357859
Alignment:
Q  95 aatcctcgtaaacacaacattcatggacctagg 127  Q
    |||| ||||||||||||||||||||||||||||    
T  357891 aatcttcgtaaacacaacattcatggacctagg 357859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 26772624 - 26772722
Alignment:
Q  29 ttacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||||||  | |||||||| || || |||| | |  ||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  26772624 ttacacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatggacctagg 26772722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 32546701 - 32546759
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||| |||||||||| || |||| |||||||||| |||||||||||||||||||||||    
T  32546701 gctagacctttttggatggcaaaaccaatcctcgtgaacacaacattcatggacctagg 32546759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 13582389 - 13582474
Alignment:
Q  42 gaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||||| || || || ||| || |||||||||||||||| ||  ||| ||||| ||||||||||||||||||||| ||||||    
T  13582389 gaaggcaagcgggcaataaacagcgtcgctaggcctttttggatggctaaatcaatcttcgtaaacacaacattcatggtcctagg 13582474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 39583430 - 39583372
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||| |||||||||| || |||| |||||||||||||||| ||||||||| |||||||    
T  39583430 gctagacctttttggatggcaaaatcaatcctcgtaaacacgacattcatgaacctagg 39583372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 26276528 - 26276577
Alignment:
Q  76 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 125  Q
    ||||||||| || |||| |||||||| |||||||||||||||||||||||    
T  26276528 ctttttggatggcaaaatcaatcctcataaacacaacattcatggaccta 26276577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 53785621 - 53785673
Alignment:
Q  75 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||| ||||| || |||| ||||||||||||||| ||||||||||||||||||    
T  53785621 ccttgttggatggcaaaaccaatcctcgtaaacataacattcatggacctagg 53785673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 26856963 - 26856905
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||||||||||| || |||| ||||||||| || ||||||||||||  |||||||    
T  26856963 gctaggcctttttggatggtaaaaccaatcctcgcaagcacaacattcataaacctagg 26856905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 38671061 - 38671023
Alignment:
Q  89 aaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  38671061 aaaaccaatcctcgtacacacaacattcatggacctagg 38671023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 44198614 - 44198731
Alignment:
Q  10 tgtatatatcaatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacac 109  Q
    ||||||||| ||| | || |||||| ||||  |||||||||| |  || |||| |||| |||   |||||||||| || |||| ||||  ||| ||||||    
T  44198614 tgtatatataaattattatttacacttgaatagaaggcaagcggacaacaagctgtgtcgctcaacctttttggatggcaaaatcaattatcgcaaacac 44198713  T
Q  110 aacattcatggacctagg 127  Q
    ||||||||||||||||||    
T  44198714 aacattcatggacctagg 44198731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 49017880 - 49017929
Alignment:
Q  76 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 125  Q
    ||||||||| || |||| |||||||| |||||||||||||||| ||||||    
T  49017880 ctttttggatggcaaaatcaatcctcataaacacaacattcattgaccta 49017929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 4763967 - 4763939
Alignment:
Q  95 aatcctcgtaaacacaacattcatggacc 123  Q
    |||||||||||||||||||||||||||||    
T  4763967 aatcctcgtaaacacaacattcatggacc 4763939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 5338551 - 5338599
Alignment:
Q  68 agctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattc 116  Q
    |||||| || ||||||| || |||| |||||||||||||||||||||||    
T  5338551 agctagaccattttggatggcaaaaccaatcctcgtaaacacaacattc 5338599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 48539094 - 48539145
Alignment:
Q  76 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  48539094 ctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctagg 48539145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 45614043 - 45613985
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||| |||||| ||| || |||| ||||||||||||||||||||||||||||||||||    
T  45614043 gctagaccttttcggatggcaaaaccaatcctcgtaaacacaacattcatggacctagg 45613985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 982828 - 982908
Alignment:
Q  42 gaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggac 122  Q
    |||||||| |||| || |||| |||| ||||| |||||||||| || || | |||||||||| ||||||||||||||||||    
T  982828 gaaggcaaacaggcaacaagctgtgtcgctagacctttttggatggcaataccaatcctcgtgaacacaacattcatggac 982908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 21327033 - 21326981
Alignment:
Q  75 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||||| || |||| |||||||||| |||||||||||||||||||||||    
T  21327033 cctttttggatggcaaaatcaatcctcgtgaacacaacattcatggacctagg 21326981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 28517498 - 28517430
Alignment:
Q  59 aagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||| |||| ||||| | |||||||| || |||| ||||||||||||||||||||||||||||| ||||    
T  28517498 aagctgtgtcgctagacttttttggatggcaaaaccaatcctcgtaaacacaacattcatggacttagg 28517430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 45003098 - 45003042
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 125  Q
    ||||| |||||||||| || |||| ||||| ||||||||||||||||||||| ||||    
T  45003098 gctagacctttttggatggcaaaatcaatcttcgtaaacacaacattcatggtccta 45003042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 27027824 - 27027773
Alignment:
Q  76 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||||  | |||| |||||||||| |||||||||||||||||||||||    
T  27027824 ctttttggatagcaaaaccaatcctcgtgaacacaacattcatggacctagg 27027773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 38839240 - 38839287
Alignment:
Q  77 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacct 124  Q
    |||||||| || |||| ||||| |||||||||||||||||||||||||    
T  38839240 tttttggatggtaaaaccaatcttcgtaaacacaacattcatggacct 38839287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 5825139 - 5825237
Alignment:
Q  29 ttacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||||||  | |||||||||||||| |||| | |  |  || ||||||| || || |||| ||||||||||||||||||||| ||| ||||||||    
T  5825139 ttacacatgaataggaggcaagcaggtaacaagctgcgccgtaagacctttttcgatggcaaaaccaatcctcgtaaacacaacatccatagacctagg 5825237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 40726673 - 40726623
Alignment:
Q  77 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||| || |||| |||||||| ||||||||||||||||||| |||||    
T  40726673 tttttggatggcaaaatcaatcctcataaacacaacattcatggatctagg 40726623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 32584506 - 32584555
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcat 118  Q
    |||||||||||||||| || |||| ||||| | |||||||||||||||||    
T  32584506 gctaggcctttttggatggtaaaatcaatctttgtaaacacaacattcat 32584555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 30688414 - 30688517
Alignment:
Q  20 aatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatg 119  Q
    ||||| ||||||||||||||  || ||||||| || || |||| | |  ||||||||||||||||    |||| ||||||||||||||||||||||||||    
T  30688414 aatgattaattacacatgaatagatggcaagcgggcaacaagctgcgccgctaggcctttttggataacaaaaccaatcctcgtaaacacaacattcatg 30688513  T
Q  120 gacc 123  Q
    ||||    
T  30688514 gacc 30688517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 24177712 - 24177654
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||| |||||||||  || |||| |||||||||| |||||||||||||||||||||||    
T  24177712 gctagacctttttggttggcaaaaccaatcctcgtgaacacaacattcatggacctagg 24177654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 34644480 - 34644530
Alignment:
Q  77 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||| || |||| ||||| ||||||||||||||||||||||||||||    
T  34644480 tttttggatggcaaaatcaatcatcgtaaacacaacattcatggacctagg 34644530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 45835380 - 45835330
Alignment:
Q  76 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctag 126  Q
    ||||||||| || |||| ||||||||||||||||||||||||| |||||||    
T  45835380 ctttttggatggcaaaatcaatcctcgtaaacacaacattcatagacctag 45835330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 5453961 - 5454057
Alignment:
Q  29 ttacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 125  Q
    |||||||||||  | |||||||| || || |||| | |  ||||| |||||||||| |  |||| ||||||| ||||||||||||||||||||||||    
T  5453961 ttacacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatgacaaaaccaatccttgtaaacacaacattcatggaccta 5454057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 28493532 - 28493477
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacct 124  Q
    ||||| |||||||||| || |||| |||||||||| |||| |||||||||||||||    
T  28493532 gctagacctttttggatggcaaaatcaatcctcgtgaacataacattcatggacct 28493477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 2764391 - 2764441
Alignment:
Q  75 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 125  Q
    |||||||||| || |||| ||||| |||||||||||||||| |||||||||    
T  2764391 cctttttggatggtaaaatcaatcatcgtaaacacaacatttatggaccta 2764441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 2898608 - 2898658
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatg 119  Q
    |||| ||||||||||| || |||| |||||||| |||||||||||||||||    
T  2898608 gctaagcctttttggatggcaaaatcaatcctcttaaacacaacattcatg 2898658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 1114063 - 1114023
Alignment:
Q  75 cctttttggacgggaaaaacaatcctcgtaaacacaacatt 115  Q
    |||||||||| || |||| ||||||||||||||||||||||    
T  1114063 cctttttggatggcaaaaccaatcctcgtaaacacaacatt 1114023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 10348672 - 10348636
Alignment:
Q  14 tatatcaatgactaattacacatgaacggaaggcaag 50  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  10348672 tatatcaatgactaattacacatgaatggaagacaag 10348636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 39001303 - 39001361
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||| |||||||||| |  |||| ||||||||||||||||||||||||||||||||||    
T  39001303 gctagacctttttggatgacaaaaccaatcctcgtaaacacaacattcatggacctagg 39001361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 53619492 - 53619548
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 125  Q
    ||||| |||||||||| || |||| |||| |||||||||||||||||||||||||||    
T  53619492 gctagacctttttggatggcaaaaccaattctcgtaaacacaacattcatggaccta 53619548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 3329902 - 3329960
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||| |||||||||| || |||| ||||| ||||||||||| ||||||||||||||||    
T  3329902 gctagacctttttggatggcaaaaccaatcatcgtaaacacagcattcatggacctagg 3329960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 4419177 - 4419227
Alignment:
Q  77 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||| || |||| ||||| ||||||||||||||||||||||||||||    
T  4419177 tttttggatggcaaaaccaatcatcgtaaacacaacattcatggacctagg 4419227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 30940973 - 30940875
Alignment:
Q  29 ttacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||| ||||  |||||||||| || || |||| | || ||||| |||||||||| || |||| |||||||| | |||||||||||||| ||||||||    
T  30940973 ttacacttgaatagaaggcaagcgggcaacaagctgcgtcgctagacctttttggatggcaaaatcaatcctcatgaacacaacattcatagacctagg 30940875  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 48657109 - 48657060
Alignment:
Q  76 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 125  Q
    |||||||||||| |||| ||||| ||||||||||||||||||| ||||||    
T  48657109 ctttttggacggcaaaatcaatcatcgtaaacacaacattcatagaccta 48657060  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 26521338 - 26521452
Alignment:
Q  12 tatatatcaatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaa 111  Q
    |||||||||| || || ||||||||| |  |||||||||| |  ||||||| |||  ||||  |||||||||| |  |||| ||||||||||||||||||    
T  26521338 tatatatcaaggattacttacacatggatagaaggcaagcggacaaaaagctgtgccgctaaacctttttggatgacaaaaccaatcctcgtaaacacaa 26521437  T
Q  112 cattcatggacctagg 127  Q
    || |||||| ||||||    
T  26521438 ca-tcatgggcctagg 26521452  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 45661599 - 45661653
Alignment:
Q  71 taggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 125  Q
    |||| |||||||||  | |||| |||||||||||||||||| |||||||||||||    
T  45661599 taggtctttttggatagtaaaaccaatcctcgtaaacacaatattcatggaccta 45661653  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 55933653 - 55933603
Alignment:
Q  77 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||| || |||| ||||| |||||||||||||||||| |||||||||    
T  55933653 tttttggatggcaaaatcaatcatcgtaaacacaacattcacggacctagg 55933603  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 16955391 - 16955424
Alignment:
Q  94 caatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||||||||||||||||||||||||| ||||||    
T  16955391 caatcctcgtaaacacaacattcatgggcctagg 16955424  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 50464497 - 50464448
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcat 118  Q
    |||||| ||||||||| || ||||  ||||||||||||||||||||||||    
T  50464497 gctaggtctttttggatggcaaaataaatcctcgtaaacacaacattcat 50464448  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 18981714 - 18981682
Alignment:
Q  94 caatcctcgtaaacacaacattcatggacctag 126  Q
    ||||| |||||||||||||||||||||||||||    
T  18981714 caatcatcgtaaacacaacattcatggacctag 18981682  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 50442674 - 50442622
Alignment:
Q  75 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||||| || |||| |||||||| |||||||||||| |||| |||||||    
T  50442674 cctttttggatggcaaaaccaatcctcttaaacacaacatccatgaacctagg 50442622  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 13413259 - 13413315
Alignment:
Q  71 taggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    |||||||||||||| || |||| |||| ||| |||||||||||||||||||||||||    
T  13413259 taggcctttttggatggcaaaaccaattctcataaacacaacattcatggacctagg 13413315  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 17344550 - 17344602
Alignment:
Q  75 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||||||||  | |||| ||||||||||||||||||||||||||||||||||    
T  17344550 cctttttggatcgaaaaatcaatcctcgtaaacacaacattcatggacctagg 17344602  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 4413267 - 4413209
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||| |||||||||| || |||| |||||||| | |||||||||||||||||||||||    
T  4413267 gctagacctttttggatggcaaaatcaatcctcatgaacacaacattcatggacctagg 4413209  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 9685616 - 9685558
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||| |||||||||| || |||||||||| | || |||||||||||||||||||||||    
T  9685616 gctagacctttttggatggcaaaaacaatctttgtgaacacaacattcatggacctagg 9685558  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 30602338 - 30602430
Alignment:
Q  12 tatatatcaatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgta 104  Q
    |||||||||| || ||||||||||||||  ||||||| || || || |||| | |  |||||||||||||||| || |||| |||||||||||    
T  30602338 tatatatcaaggattaattacacatgaatagaaggcatgcgggcaacaagctgcgctgctaggcctttttggatggcaaaaccaatcctcgta 30602430  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 41868089 - 41868054
Alignment:
Q  89 aaaaacaatcctcgtaaacacaacattcatggacct 124  Q
    |||| |||||||||||||||||||||||||||||||    
T  41868089 aaaaccaatcctcgtaaacacaacattcatggacct 41868054  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 18745155 - 18745097
Alignment:
Q  69 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||| |||||||||| || |||| |||||||  |||||||||||||||| ||||||||    
T  18745155 gctagacctttttggatggcaaaaccaatccttataaacacaacattcatagacctagg 18745097  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 44686348 - 44686380
Alignment:
Q  95 aatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||||||||||||||||||||| |||||||||    
T  44686348 aatcctcgtaaacacaacattcacggacctagg 44686380  T

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Target: scaffold0148 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 33161 - 33214
Alignment:
Q  74 gcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 127  Q
    ||||||||||| |  |||| |||||||||||||||| || ||||||||||||||    
T  33161 gcctttttggatgacaaaatcaatcctcgtaaacacgacgttcatggacctagg 33214  T

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