View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6493_low_1 (Length: 429)
Name: NF6493_low_1
Description: NF6493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6493_low_1 |
 |  |
|
| [»] scaffold0035 (1 HSPs) |
 |  |  |
|
| [»] scaffold0096 (1 HSPs) |
 |  |  |
|
| [»] scaffold0045 (1 HSPs) |
 |  |  |
|
| [»] scaffold0596 (1 HSPs) |
 |  |  |
|
| [»] scaffold0157 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 1616307 - 1615899
Alignment:
| Q |
1 |
cgtatcattcatcataaataatcaaatcaacgagtcctttagggactttccgataaataaattcataaatactaaatatgagggcatttattcagaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1616307 |
cgtatcattcatcataaataatcaaatcaatgagtcctttagggactttccgataaataaattcataaatactaaatatgagggcatttattcaaaaaca |
1616208 |
T |
 |
| Q |
101 |
gtataaaaactgatctttataaacaaatactaaatattaaaaaactacaatcattaaaggatgtcatttatttatttattcatgtttttcgtttttataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1616207 |
gtataaaaactgatctttataaacaaatactaaatattaaaaaactacaatcattaaaggatgtcatttatttatttattcatgtttttcttttttataa |
1616108 |
T |
 |
| Q |
201 |
ataaaagttttgatgtgttaggctaaggaggtacatcatggttagacggatctcatggttacgatgttatgttacagtattcaatcatacttatattcaa |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
1616107 |
ataaaagttttgatgagttaggctaaggaggtaaatcatgg-----------tcatggttacgatgttatgttacagtattcaatcatccttatatccaa |
1616019 |
T |
 |
| Q |
301 |
tctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcatcatttggctaaacatgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
1616018 |
tctttgttaacattgttaatgactttgtaaccattaaatctaaatggtttttgctccaaacaagggagatcgttggatcgcatcatttggctaagcatgc |
1615919 |
T |
 |
| Q |
401 |
atcttattctttgatctaat |
420 |
Q |
| |
|
|||| || |||||||||||| |
|
|
| T |
1615918 |
atctcatcctttgatctaat |
1615899 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 18355434 - 18355293
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
382 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||||||||||||||||||| || |
|
|
| T |
18355434 |
atcatacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggtcgttggatctca |
18355335 |
T |
 |
| Q |
383 |
tcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
|||||||||||| ||||||||| || |||| ||||||||||| |
|
|
| T |
18355334 |
tcatttggctaagcatgcatctcatcctttaatctaatctga |
18355293 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 283 - 424
Target Start/End: Complemental strand, 23349102 - 23348960
Alignment:
| Q |
283 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc |
381 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| | |
|
|
| T |
23349102 |
aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctc |
23349003 |
T |
 |
| Q |
382 |
atcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
23349002 |
atcatttggctaagcatgcatctcatcctttgatctaatctga |
23348960 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 299 - 424
Target Start/End: Original strand, 12741703 - 12741829
Alignment:
| Q |
299 |
aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaaca |
397 |
Q |
| |
|
||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||| ||||| ||||||||| |||||||||||||| || |
|
|
| T |
12741703 |
aatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaaaggaggccgttggatctcatcatttggctaagca |
12741802 |
T |
 |
| Q |
398 |
tgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
||||||| || |||||||||||||||| |
|
|
| T |
12741803 |
tgcatctcatcctttgatctaatctga |
12741829 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 10329013 - 10328871
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgct-tcaaacaagggaggtcgttggatcgca |
382 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||| ||||| | | | |||||||||||| ||||||||| || |
|
|
| T |
10329013 |
atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttggttctaaaacaagggaggccgttggatctca |
10328914 |
T |
 |
| Q |
383 |
tcatttggctaaacatgcatcttattc-tttgatctaatctga |
424 |
Q |
| |
|
|||||||||||| ||||||||| || | ||||||||||||||| |
|
|
| T |
10328913 |
tcatttggctaagcatgcatctcatccttttgatctaatctga |
10328871 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 424
Target Start/End: Original strand, 24454588 - 24454655
Alignment:
| Q |
357 |
caaacaagggaggtcgttggatcgcatcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
||||||||| || ||||||||| |||||||||||| |||| ||||| || |||||||||||||||| |
|
|
| T |
24454588 |
caaacaaggagggccgttggatctcatcatttggcttgacattcatctcatcctttgatctaatctga |
24454655 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 424
Target Start/End: Original strand, 35061 - 35204
Alignment:
| Q |
282 |
caatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcg |
380 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||||||||||| ||| |||| |||||||||| |||||||| |
|
|
| T |
35061 |
caatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggttgttggatct |
35160 |
T |
 |
| Q |
381 |
catcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
|||||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
35161 |
catcatttggctaagcatgcatctcatcctttgatctaatctga |
35204 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 283 - 420
Target Start/End: Original strand, 27409 - 27546
Alignment:
| Q |
283 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgca |
382 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |||| || | ||||||||||||||||| ||| ||||||||||||| ||||||||| || |
|
|
| T |
27409 |
aatcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctca |
27508 |
T |
 |
| Q |
383 |
tcatttggctaaacatgcatcttattctttgatctaat |
420 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||||| |
|
|
| T |
27509 |
tcatttggctaagcatgcatctcatcctttgatctaat |
27546 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 14678142 - 14678001
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
382 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| || |
|
|
| T |
14678142 |
atcatacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca |
14678043 |
T |
 |
| Q |
383 |
tcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
14678042 |
tcatttggctaagcatgcatctcatcctttgatctaatctga |
14678001 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 27541679 - 27541539
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcat |
383 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||||||| ||| ||| ||||||||||| | ||||||||| ||| |
|
|
| T |
27541679 |
atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaacaagggacgccgttggatctcat |
27541580 |
T |
 |
| Q |
384 |
catttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
27541579 |
catttggctaagcatgcatctcatcctttgatctaatctga |
27541539 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 284 - 424
Target Start/End: Original strand, 5657771 - 5657912
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
382 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| ||||||||||| || | ||||||||||| ||||| ||| |||| ||||||||| ||||||||| || |
|
|
| T |
5657771 |
atcatacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctca |
5657870 |
T |
 |
| Q |
383 |
tcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
|||||||| ||| ||||||||| || |||||||||||||||| |
|
|
| T |
5657871 |
tcatttggttaagcatgcatctcatcctttgatctaatctga |
5657912 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 31100993 - 31100852
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
382 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| ||| |||| ||||||||| |||| |||| || |
|
|
| T |
31100993 |
atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctca |
31100894 |
T |
 |
| Q |
383 |
tcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
|||||||| ||| |||| |||| || |||||||||||||||| |
|
|
| T |
31100893 |
tcatttggttaagcatgtatctcatcctttgatctaatctga |
31100852 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 327
Target Start/End: Original strand, 23738657 - 23738700
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttg |
327 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
23738657 |
atcatacttatatctaatctttgttaacattgctaatgactttg |
23738700 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 283 - 424
Target Start/End: Original strand, 1262087 - 1262229
Alignment:
| Q |
283 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc |
381 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||||||||||| ||| |||| ||||||| | ||||||||| | |
|
|
| T |
1262087 |
aatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggatctc |
1262186 |
T |
 |
| Q |
382 |
atcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
1262187 |
atcatttggctaagcatgcatctcatcctttgatctaatctga |
1262229 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 279 - 424
Target Start/End: Complemental strand, 43071508 - 43071362
Alignment:
| Q |
279 |
attcaatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttgga |
377 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||| |
|
|
| T |
43071508 |
attctatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttgga |
43071409 |
T |
 |
| Q |
378 |
tcgcatcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
|| |||||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
43071408 |
tctcatcatttggctaagcatgcatctcatcctttgatctaatctga |
43071362 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 283 - 424
Target Start/End: Complemental strand, 48849929 - 48849787
Alignment:
| Q |
283 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc |
381 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| ||||||| | |||||||| | |
|
|
| T |
48849929 |
aatcatacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctc |
48849830 |
T |
 |
| Q |
382 |
atcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
48849829 |
atcatttggctaagcatgcatctcatcctttgatctaatctga |
48849787 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 283 - 424
Target Start/End: Complemental strand, 26910103 - 26909961
Alignment:
| Q |
283 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc |
381 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| |||||| || | ||||||||||||| ||| ||| |||| |||||||| | ||||||| |
|
|
| T |
26910103 |
aatcatacttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatctt |
26910004 |
T |
 |
| Q |
382 |
atcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
26910003 |
atcatttggctaagcatgcatctcatcctttgatctaatctga |
26909961 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 284 - 422
Target Start/End: Original strand, 17681767 - 17681905
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcat |
383 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||| || | ||||||||||||||||| ||| |||||||||| || ||||||||| ||| |
|
|
| T |
17681767 |
atcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctccaaacaaggggggccgttggatctcat |
17681866 |
T |
 |
| Q |
384 |
catttggctaaacatgcatcttattctttgatctaatct |
422 |
Q |
| |
|
||||||| ||| ||||||||| || |||||||||||||| |
|
|
| T |
17681867 |
catttggttaagcatgcatctcatcctttgatctaatct |
17681905 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 283 - 424
Target Start/End: Original strand, 31685076 - 31685218
Alignment:
| Q |
283 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgc |
381 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| ||||||||||| || | ||||||||||||||||| ||| |||| |||||||| ||||| ||| | |
|
|
| T |
31685076 |
aatcatacttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttgaatctc |
31685175 |
T |
 |
| Q |
382 |
atcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
31685176 |
atcatttggctaagcatgcatctcatcctttgatctaatctga |
31685218 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 53973407 - 53973266
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
382 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| || |
|
|
| T |
53973407 |
atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctca |
53973308 |
T |
 |
| Q |
383 |
tcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
|||||||||||| | ||||||| || |||||||||||||||| |
|
|
| T |
53973307 |
tcatttggctaagcctgcatctcatcctttgatctaatctga |
53973266 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 284 - 420
Target Start/End: Complemental strand, 12538756 - 12538620
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcat |
383 |
Q |
| |
|
||||||||||||| ||||||||||||| || |||||| |||| || | ||||||||||||||||| ||| ||||||||||||| ||||||||| ||| |
|
|
| T |
12538756 |
atcatacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcat |
12538657 |
T |
 |
| Q |
384 |
catttggctaaacatgcatcttattctttgatctaat |
420 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||| |
|
|
| T |
12538656 |
catttggctaagcatgcatcacatcctttgatctaat |
12538620 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 299 - 424
Target Start/End: Complemental strand, 19882217 - 19882091
Alignment:
| Q |
299 |
aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaaca |
397 |
Q |
| |
|
||||||||||||||||| |||||| |||||| | ||||||||||||||||| ||| |||| |||||||| ||||||||| |||||||||||||| || |
|
|
| T |
19882217 |
aatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttggctaagca |
19882118 |
T |
 |
| Q |
398 |
tgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
||||||| || |||||||||||||||| |
|
|
| T |
19882117 |
tgcatctcatcctttgatctaatctga |
19882091 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 283 - 424
Target Start/End: Original strand, 37982348 - 37982490
Alignment:
| Q |
283 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc |
381 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| |||||||| ||||||||| | |
|
|
| T |
37982348 |
aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctc |
37982447 |
T |
 |
| Q |
382 |
atcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
||||||||||||| ||||||||| || |||| ||||||||||| |
|
|
| T |
37982448 |
atcatttggctaagcatgcatctcatcctttaatctaatctga |
37982490 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 284 - 424
Target Start/End: Original strand, 2549937 - 2550077
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca |
382 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||||||||||| || | |||||||||||| |||| ||| | |||||||||||| ||||||||| | |
|
|
| T |
2549937 |
atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatc-ta |
2550035 |
T |
 |
| Q |
383 |
tcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
|||||||||||| ||||||||| || ||||||| |||||||| |
|
|
| T |
2550036 |
tcatttggctaagcatgcatctcatcctttgatttaatctga |
2550077 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 420
Target Start/End: Complemental strand, 24762020 - 24761882
Alignment:
| Q |
283 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgc |
381 |
Q |
| |
|
|||||||||||||| |||| || ||||||||| ||||||||||| || | ||||||||||||||||| ||| | |||||| | | ||||||||| | |
|
|
| T |
24762020 |
aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctc |
24761921 |
T |
 |
| Q |
382 |
atcatttggctaaacatgcatcttattctttgatctaat |
420 |
Q |
| |
|
||||||||||| | ||||||||| || |||||||||||| |
|
|
| T |
24761920 |
atcatttggctcagcatgcatctcatcctttgatctaat |
24761882 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 40050628 - 40050698
Alignment:
| Q |
1 |
cgtatcattcatcataaataatcaaatcaacgagtcctttagggactttccgataaataaattcataaata |
71 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
40050628 |
cgtatcattcttcataaataatcaaatcaatgaatcctttaacgacttttcgataaataaattcataaata |
40050698 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 420
Target Start/End: Original strand, 24815915 - 24816052
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca |
382 |
Q |
| |
|
||||||||||||| |||| || ||||||||| ||||||||||| || | ||||||||||||||||| ||| | |||| | | || ||||||||| || |
|
|
| T |
24815915 |
atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatctca |
24816014 |
T |
 |
| Q |
383 |
tcatttggctaaacatgcatcttattctttgatctaat |
420 |
Q |
| |
|
|||||||||| | ||||||||| || |||||||||||| |
|
|
| T |
24816015 |
tcatttggctcagcatgcatctcatcctttgatctaat |
24816052 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 53027785 - 53027736
Alignment:
| Q |
371 |
cgttggatcgcatcatttggctaaacatgcatcttattctttgatctaat |
420 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||| || |||||||||||| |
|
|
| T |
53027785 |
cgttggatctcatcatttggctcagcatgcatctcatcctttgatctaat |
53027736 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 53352882 - 53352806
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa |
360 |
Q |
| |
|
||||||||||||| |||| || ||||||||| ||||||||||| || | |||||||||| |||||| ||| |||| |
|
|
| T |
53352882 |
atcatacttatatctaatccttcttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaa |
53352806 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 22009649 - 22009508
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
382 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| |||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| || |
|
|
| T |
22009649 |
atcatacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca |
22009550 |
T |
 |
| Q |
383 |
tcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
22009549 |
tcatttggctaagcatgcatctcatcctttgatctaatctga |
22009508 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 282 - 424
Target Start/End: Original strand, 9043800 - 9043943
Alignment:
| Q |
282 |
caatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcg |
380 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| |
|
|
| T |
9043800 |
caatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatct |
9043899 |
T |
 |
| Q |
381 |
catcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
|||||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
9043900 |
catcatttggctaagcatgcatctcatcctttgatctaatctga |
9043943 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 7473610 - 7473469
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
382 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| || |
|
|
| T |
7473610 |
atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca |
7473511 |
T |
 |
| Q |
383 |
tcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
|||||| ||||| ||||||||| || |||||||||||||||| |
|
|
| T |
7473510 |
tcatttagctaagcatgcatctcatcctttgatctaatctga |
7473469 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 424
Target Start/End: Complemental strand, 30442667 - 30442527
Alignment:
| Q |
285 |
tcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcat |
383 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| ||| |
|
|
| T |
30442667 |
tcatgcttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat |
30442568 |
T |
 |
| Q |
384 |
catttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
30442567 |
catttggctaagcatgcatctcatcctttgatctaatctga |
30442527 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 19085498 - 19085420
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca |
362 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||||||||||| ||| |||||| |
|
|
| T |
19085498 |
atcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaca |
19085420 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 26841070 - 26840989
Alignment:
| Q |
299 |
aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatc |
379 |
Q |
| |
|
||||||||||||||||| |||||| |||| || | ||||||||||||||||| ||| | ||||||||||| ||||||||| |
|
|
| T |
26841070 |
aatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatc |
26840989 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 412
Target Start/End: Original strand, 10092512 - 10092641
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca |
382 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| || | |||| |||||||||||| ||| | |||||||||||| ||||||||| || |
|
|
| T |
10092512 |
atcatacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatctca |
10092611 |
T |
 |
| Q |
383 |
tcatttggctaaacatgcatcttattcttt |
412 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| |
|
|
| T |
10092612 |
tcatttggctaagcatgcatctcattcttt |
10092641 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 299 - 424
Target Start/End: Complemental strand, 33045537 - 33045411
Alignment:
| Q |
299 |
aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgcatcatttggctaaaca |
397 |
Q |
| |
|
||||||||||||||||| ||||||||||| || | ||||||||||||||||| ||| |||| |||||||| ||||||||| |||||||||| ||| || |
|
|
| T |
33045537 |
aatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttggatctcatcatttggttaagca |
33045438 |
T |
 |
| Q |
398 |
tgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
||||||| || |||||||||||||||| |
|
|
| T |
33045437 |
tgcatctcatcctttgatctaatctga |
33045411 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 283 - 394
Target Start/End: Original strand, 3065697 - 3065808
Alignment:
| Q |
283 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgca |
382 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||||||||||| || | ||||||||||||||||| ||| |||||||||||| ||||||||| || |
|
|
| T |
3065697 |
aatcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctccaaacaagggagaccgttggatctca |
3065796 |
T |
 |
| Q |
383 |
tcatttggctaa |
394 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3065797 |
tcatttggctaa |
3065808 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 425
Target Start/End: Original strand, 8976419 - 8976546
Alignment:
| Q |
299 |
aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgcatcatttggctaaaca |
397 |
Q |
| |
|
|||||||||||| |||| |||||||||| || | ||||||||||||||||| ||| |||| ||||||| ||||||||| ||| |||| |||||||| |
|
|
| T |
8976419 |
aatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaaataagggagaccgttggatctcattatttagctaaaca |
8976518 |
T |
 |
| Q |
398 |
tgcatcttattctttgatctaatctgat |
425 |
Q |
| |
|
||||||| || ||||||||||||||||| |
|
|
| T |
8976519 |
tgcatctcatcctttgatctaatctgat |
8976546 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 16246701 - 16246780
Alignment:
| Q |
283 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca |
362 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||||||||| || | ||| ||||||||||||| ||| |||||| |
|
|
| T |
16246701 |
aatcatacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatcctaaatggttttggctccaaaca |
16246780 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 30908475 - 30908412
Alignment:
| Q |
299 |
aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca |
362 |
Q |
| |
|
||||||||||||||||| ||||||||||| || | |||| |||||||||||| ||| |||||| |
|
|
| T |
30908475 |
aatctttgttaacattgctaatgactttgcaaaccctaaatctaaatggttttggctccaaaca |
30908412 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 4660295 - 4660253
Alignment:
| Q |
285 |
tcatacttatattcaatctttgttaacattgttaatgactttg |
327 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
4660295 |
tcatacttatatataatctttgttaacattgctaatgactttg |
4660253 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 29863482 - 29863341
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
382 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | ||||||||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| || |
|
|
| T |
29863482 |
atcatacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctca |
29863383 |
T |
 |
| Q |
383 |
tcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
|||||||||| | ||||||||| || |||||||||||||||| |
|
|
| T |
29863382 |
tcatttggctgagcatgcatctcatcctttgatctaatctga |
29863341 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 12506435 - 12506479
Alignment:
| Q |
283 |
aatcatacttatattcaatctttgttaacattgttaatgactttg |
327 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
12506435 |
aatcatacttatatctaatctttgttaacattgctaatgactttg |
12506479 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 11755 - 11614
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
382 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||| ||||||| || |||| ||||||||| ||||||||| || |
|
|
| T |
11755 |
atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctca |
11656 |
T |
 |
| Q |
383 |
tcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
|||||||| ||| ||||||||| || ||||||| |||||||| |
|
|
| T |
11655 |
tcatttggttaagcatgcatctcatcctttgatttaatctga |
11614 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 424
Target Start/End: Original strand, 654 - 795
Alignment:
| Q |
284 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgca |
382 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| ||| || | ||||||||||||||||| || |||| |||||||| ||||||||| || |
|
|
| T |
654 |
atcatacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaaataagggaggccgttggatctca |
753 |
T |
 |
| Q |
383 |
tcatttggctaaacatgcatcttattctttgatctaatctga |
424 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
754 |
tcatttggctaagcatgcatctcatcctttgatctaatctga |
795 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 14042 - 13998
Alignment:
| Q |
283 |
aatcatacttatattcaatctttgttaacattgttaatgactttg |
327 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
14042 |
aatcatacttatatctaatctttgttaacattgctaatgactttg |
13998 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 50990911 - 50990985
Alignment:
| Q |
288 |
tacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca |
362 |
Q |
| |
|
||||||||| ||||||||||||||||| | || |||||| || | ||||||||||||||||| ||| |||||| |
|
|
| T |
50990911 |
tacttatatctaatctttgttaacattgctgataactttgcaaaccctaaacctaaatggttttggctccaaaca |
50990985 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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