View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6493_low_1 (Length: 429)

Name: NF6493_low_1
Description: NF6493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6493_low_1
NF6493_low_1
[»] chr2 (6 HSPs)
chr2 (1-420)||(1615899-1616307)
chr2 (284-424)||(18355293-18355434)
chr2 (283-424)||(23348960-23349102)
chr2 (299-424)||(12741703-12741829)
chr2 (284-424)||(10328871-10329013)
chr2 (357-424)||(24454588-24454655)
[»] scaffold0035 (1 HSPs)
scaffold0035 (282-424)||(35061-35204)
[»] scaffold0096 (1 HSPs)
scaffold0096 (283-420)||(27409-27546)
[»] chr8 (5 HSPs)
chr8 (284-424)||(14678001-14678142)
chr8 (284-424)||(27541539-27541679)
chr8 (284-424)||(5657771-5657912)
chr8 (284-424)||(31100852-31100993)
chr8 (284-327)||(23738657-23738700)
[»] chr7 (4 HSPs)
chr7 (283-424)||(1262087-1262229)
chr7 (279-424)||(43071362-43071508)
chr7 (283-424)||(48849787-48849929)
chr7 (283-424)||(26909961-26910103)
[»] chr3 (12 HSPs)
chr3 (284-422)||(17681767-17681905)
chr3 (283-424)||(31685076-31685218)
chr3 (284-424)||(53973266-53973407)
chr3 (284-420)||(12538620-12538756)
chr3 (299-424)||(19882091-19882217)
chr3 (283-424)||(37982348-37982490)
chr3 (284-424)||(2549937-2550077)
chr3 (283-420)||(24761882-24762020)
chr3 (1-71)||(40050628-40050698)
chr3 (284-420)||(24815915-24816052)
chr3 (371-420)||(53027736-53027785)
chr3 (284-360)||(53352806-53352882)
[»] chr5 (6 HSPs)
chr5 (284-424)||(22009508-22009649)
chr5 (282-424)||(9043800-9043943)
chr5 (284-424)||(7473469-7473610)
chr5 (285-424)||(30442527-30442667)
chr5 (284-362)||(19085420-19085498)
chr5 (299-379)||(26840989-26841070)
[»] chr6 (7 HSPs)
chr6 (284-412)||(10092512-10092641)
chr6 (299-424)||(33045411-33045537)
chr6 (283-394)||(3065697-3065808)
chr6 (299-425)||(8976419-8976546)
chr6 (283-362)||(16246701-16246780)
chr6 (299-362)||(30908412-30908475)
chr6 (285-327)||(4660253-4660295)
[»] chr4 (2 HSPs)
chr4 (284-424)||(29863341-29863482)
chr4 (283-327)||(12506435-12506479)
[»] scaffold0045 (1 HSPs)
scaffold0045 (284-424)||(11614-11755)
[»] scaffold0596 (1 HSPs)
scaffold0596 (284-424)||(654-795)
[»] scaffold0157 (1 HSPs)
scaffold0157 (283-327)||(13998-14042)
[»] chr1 (1 HSPs)
chr1 (288-362)||(50990911-50990985)


Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 1616307 - 1615899
Alignment:
1 cgtatcattcatcataaataatcaaatcaacgagtcctttagggactttccgataaataaattcataaatactaaatatgagggcatttattcagaaaca 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
1616307 cgtatcattcatcataaataatcaaatcaatgagtcctttagggactttccgataaataaattcataaatactaaatatgagggcatttattcaaaaaca 1616208  T
101 gtataaaaactgatctttataaacaaatactaaatattaaaaaactacaatcattaaaggatgtcatttatttatttattcatgtttttcgtttttataa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
1616207 gtataaaaactgatctttataaacaaatactaaatattaaaaaactacaatcattaaaggatgtcatttatttatttattcatgtttttcttttttataa 1616108  T
201 ataaaagttttgatgtgttaggctaaggaggtacatcatggttagacggatctcatggttacgatgttatgttacagtattcaatcatacttatattcaa 300  Q
    ||||||||||||||| ||||||||||||||||| |||||||           |||||||||||||||||||||||||||||||||||| ||||||| |||    
1616107 ataaaagttttgatgagttaggctaaggaggtaaatcatgg-----------tcatggttacgatgttatgttacagtattcaatcatccttatatccaa 1616019  T
301 tctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcatcatttggctaaacatgc 400  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||    
1616018 tctttgttaacattgttaatgactttgtaaccattaaatctaaatggtttttgctccaaacaagggagatcgttggatcgcatcatttggctaagcatgc 1615919  T
401 atcttattctttgatctaat 420  Q
    |||| || ||||||||||||    
1615918 atctcatcctttgatctaat 1615899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 18355434 - 18355293
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca 382  Q
    |||||||||||||| ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| |||| ||||||||||||||||||| ||    
18355434 atcatacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggtcgttggatctca 18355335  T
383 tcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    |||||||||||| ||||||||| || |||| |||||||||||    
18355334 tcatttggctaagcatgcatctcatcctttaatctaatctga 18355293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 283 - 424
Target Start/End: Complemental strand, 23349102 - 23348960
Alignment:
283 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc 381  Q
    ||||||||||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| |||| ||||||||| ||||||||| |    
23349102 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctc 23349003  T
382 atcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    ||||||||||||| ||||||||| || ||||||||||||||||    
23349002 atcatttggctaagcatgcatctcatcctttgatctaatctga 23348960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 299 - 424
Target Start/End: Original strand, 12741703 - 12741829
Alignment:
299 aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaaca 397  Q
    ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| |||| ||| ||||| ||||||||| |||||||||||||| ||    
12741703 aatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaaaggaggccgttggatctcatcatttggctaagca 12741802  T
398 tgcatcttattctttgatctaatctga 424  Q
    ||||||| || ||||||||||||||||    
12741803 tgcatctcatcctttgatctaatctga 12741829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 10329013 - 10328871
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgct-tcaaacaagggaggtcgttggatcgca 382  Q
    |||||||||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||| ||||| | | | |||||||||||| ||||||||| ||    
10329013 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttggttctaaaacaagggaggccgttggatctca 10328914  T
383 tcatttggctaaacatgcatcttattc-tttgatctaatctga 424  Q
    |||||||||||| ||||||||| || | |||||||||||||||    
10328913 tcatttggctaagcatgcatctcatccttttgatctaatctga 10328871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 424
Target Start/End: Original strand, 24454588 - 24454655
Alignment:
357 caaacaagggaggtcgttggatcgcatcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    |||||||||  || ||||||||| ||||||||||||  |||| ||||| || ||||||||||||||||    
24454588 caaacaaggagggccgttggatctcatcatttggcttgacattcatctcatcctttgatctaatctga 24454655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 424
Target Start/End: Original strand, 35061 - 35204
Alignment:
282 caatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcg 380  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||| || |  ||||||||||||||||| ||| |||| |||||||||| ||||||||     
35061 caatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggttgttggatct 35160  T
381 catcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    |||||||||||||| ||||||||| || ||||||||||||||||    
35161 catcatttggctaagcatgcatctcatcctttgatctaatctga 35204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 283 - 420
Target Start/End: Original strand, 27409 - 27546
Alignment:
283 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgca 382  Q
    ||||||||||||||  ||||||||||||||||| |||||| |||| || |  ||||||||||||||||| ||| ||||||||||||| ||||||||| ||    
27409 aatcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctca 27508  T
383 tcatttggctaaacatgcatcttattctttgatctaat 420  Q
    |||||||||||| ||||||||| || ||||||||||||    
27509 tcatttggctaagcatgcatctcatcctttgatctaat 27546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 14678142 - 14678001
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca 382  Q
    |||||||||||||  ||||||||||||||||| ||||||||||| || |  ||||||||||||||||| ||| |||| ||||||||| ||||||||| ||    
14678142 atcatacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 14678043  T
383 tcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    |||||||||||| ||||||||| || ||||||||||||||||    
14678042 tcatttggctaagcatgcatctcatcctttgatctaatctga 14678001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 27541679 - 27541539
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcat 383  Q
    |||||||||||||  ||||||||||||||||| ||||||||||| || |  ||||||||||||| ||| ||| ||||||||||| | ||||||||| |||    
27541679 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaacaagggacgccgttggatctcat 27541580  T
384 catttggctaaacatgcatcttattctttgatctaatctga 424  Q
    ||||||||||| ||||||||| || ||||||||||||||||    
27541579 catttggctaagcatgcatctcatcctttgatctaatctga 27541539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 284 - 424
Target Start/End: Original strand, 5657771 - 5657912
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca 382  Q
    |||||||||||||  ||||||||||||| ||| ||||||||||| || |  ||||||||||| ||||| ||| |||| ||||||||| ||||||||| ||    
5657771 atcatacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctca 5657870  T
383 tcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    |||||||| ||| ||||||||| || ||||||||||||||||    
5657871 tcatttggttaagcatgcatctcatcctttgatctaatctga 5657912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 31100993 - 31100852
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca 382  Q
    |||||||||||||  ||||||||||||||||| ||||||||||| ||    ||||||||||||||||| ||| |||| ||||||||| |||| |||| ||    
31100993 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctca 31100894  T
383 tcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    |||||||| ||| |||| |||| || ||||||||||||||||    
31100893 tcatttggttaagcatgtatctcatcctttgatctaatctga 31100852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 327
Target Start/End: Original strand, 23738657 - 23738700
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttg 327  Q
    |||||||||||||  ||||||||||||||||| |||||||||||    
23738657 atcatacttatatctaatctttgttaacattgctaatgactttg 23738700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 283 - 424
Target Start/End: Original strand, 1262087 - 1262229
Alignment:
283 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc 381  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||| || |  ||||||||||||||||| ||| |||| ||||||| | ||||||||| |    
1262087 aatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggatctc 1262186  T
382 atcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    ||||||||||||| ||||||||| || ||||||||||||||||    
1262187 atcatttggctaagcatgcatctcatcctttgatctaatctga 1262229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 279 - 424
Target Start/End: Complemental strand, 43071508 - 43071362
Alignment:
279 attcaatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttgga 377  Q
    |||| |||||||||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| |||| ||||||||| |||||||    
43071508 attctatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttgga 43071409  T
378 tcgcatcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    || |||||||||||||| ||||||||| || ||||||||||||||||    
43071408 tctcatcatttggctaagcatgcatctcatcctttgatctaatctga 43071362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 283 - 424
Target Start/End: Complemental strand, 48849929 - 48849787
Alignment:
283 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc 381  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||||||    ||||||||||||||||| ||| |||| |||||||  | |||||||| |    
48849929 aatcatacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctc 48849830  T
382 atcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    ||||||||||||| ||||||||| || ||||||||||||||||    
48849829 atcatttggctaagcatgcatctcatcctttgatctaatctga 48849787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 283 - 424
Target Start/End: Complemental strand, 26910103 - 26909961
Alignment:
283 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc 381  Q
    ||||||||||||||  ||||||||||||||||| |||| |||||| || |  ||||||||||||| ||| ||| |||| ||||||||  | |||||||      
26910103 aatcatacttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatctt 26910004  T
382 atcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    ||||||||||||| ||||||||| || ||||||||||||||||    
26910003 atcatttggctaagcatgcatctcatcctttgatctaatctga 26909961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 284 - 422
Target Start/End: Original strand, 17681767 - 17681905
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcat 383  Q
    |||||||||||||  |||||||||||||||||||||||| |||| || |  ||||||||||||||||| ||| |||||||||| || ||||||||| |||    
17681767 atcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctccaaacaaggggggccgttggatctcat 17681866  T
384 catttggctaaacatgcatcttattctttgatctaatct 422  Q
    ||||||| ||| ||||||||| || ||||||||||||||    
17681867 catttggttaagcatgcatctcatcctttgatctaatct 17681905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 283 - 424
Target Start/End: Original strand, 31685076 - 31685218
Alignment:
283 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgc 381  Q
    ||||||||||||||  ||||||| ||||||||| ||||||||||| || |  ||||||||||||||||| ||| ||||  |||||||| ||||| ||| |    
31685076 aatcatacttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttgaatctc 31685175  T
382 atcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    ||||||||||||| ||||||||| || ||||||||||||||||    
31685176 atcatttggctaagcatgcatctcatcctttgatctaatctga 31685218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 53973407 - 53973266
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca 382  Q
    |||||||||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| |||| ||||||||| ||||||||| ||    
53973407 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctca 53973308  T
383 tcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    |||||||||||| | ||||||| || ||||||||||||||||    
53973307 tcatttggctaagcctgcatctcatcctttgatctaatctga 53973266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 284 - 420
Target Start/End: Complemental strand, 12538756 - 12538620
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcat 383  Q
    |||||||||||||  ||||||||||||| ||  |||||| |||| || |  ||||||||||||||||| ||| ||||||||||||| ||||||||| |||    
12538756 atcatacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcat 12538657  T
384 catttggctaaacatgcatcttattctttgatctaat 420  Q
    ||||||||||| ||||||||  || ||||||||||||    
12538656 catttggctaagcatgcatcacatcctttgatctaat 12538620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 299 - 424
Target Start/End: Complemental strand, 19882217 - 19882091
Alignment:
299 aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaaca 397  Q
    ||||||||||||||||| ||||||  |||||| |  ||||||||||||||||| ||| |||| ||||||||  ||||||||| |||||||||||||| ||    
19882217 aatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttggctaagca 19882118  T
398 tgcatcttattctttgatctaatctga 424  Q
    ||||||| || ||||||||||||||||    
19882117 tgcatctcatcctttgatctaatctga 19882091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 283 - 424
Target Start/End: Original strand, 37982348 - 37982490
Alignment:
283 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc 381  Q
    ||||||||||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| |||| ||||||||  ||||||||| |    
37982348 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctc 37982447  T
382 atcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    ||||||||||||| ||||||||| || |||| |||||||||||    
37982448 atcatttggctaagcatgcatctcatcctttaatctaatctga 37982490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 284 - 424
Target Start/End: Original strand, 2549937 - 2550077
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca 382  Q
    |||||||||||||  ||||||  ||||||||| ||||||||||| || |  |||||||||||| |||| ||| | |||||||||||| |||||||||  |    
2549937 atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatc-ta 2550035  T
383 tcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    |||||||||||| ||||||||| || ||||||| ||||||||    
2550036 tcatttggctaagcatgcatctcatcctttgatttaatctga 2550077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 420
Target Start/End: Complemental strand, 24762020 - 24761882
Alignment:
283 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgc 381  Q
    ||||||||||||||  |||| || ||||||||| ||||||||||| || |  ||||||||||||||||| ||| | |||||| |  |  ||||||||| |    
24762020 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctc 24761921  T
382 atcatttggctaaacatgcatcttattctttgatctaat 420  Q
    ||||||||||| | ||||||||| || ||||||||||||    
24761920 atcatttggctcagcatgcatctcatcctttgatctaat 24761882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 40050628 - 40050698
Alignment:
1 cgtatcattcatcataaataatcaaatcaacgagtcctttagggactttccgataaataaattcataaata 71  Q
    |||||||||| ||||||||||||||||||| || |||||||  |||||| |||||||||||||||||||||    
40050628 cgtatcattcttcataaataatcaaatcaatgaatcctttaacgacttttcgataaataaattcataaata 40050698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 420
Target Start/End: Original strand, 24815915 - 24816052
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca 382  Q
    |||||||||||||  |||| || ||||||||| ||||||||||| || |  ||||||||||||||||| ||| | |||| | |  || ||||||||| ||    
24815915 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatctca 24816014  T
383 tcatttggctaaacatgcatcttattctttgatctaat 420  Q
    |||||||||| | ||||||||| || ||||||||||||    
24816015 tcatttggctcagcatgcatctcatcctttgatctaat 24816052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 53027785 - 53027736
Alignment:
371 cgttggatcgcatcatttggctaaacatgcatcttattctttgatctaat 420  Q
    ||||||||| |||||||||||| | ||||||||| || ||||||||||||    
53027785 cgttggatctcatcatttggctcagcatgcatctcatcctttgatctaat 53027736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 53352882 - 53352806
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa 360  Q
    |||||||||||||  |||| || ||||||||| ||||||||||| || |  |||||||||| |||||| ||| ||||    
53352882 atcatacttatatctaatccttcttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaa 53352806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 22009649 - 22009508
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca 382  Q
    |||||||||||||  ||||||||||||||||| |||||| |||| || |  ||||||||||||||||| ||| |||| ||||||||| ||||||||| ||    
22009649 atcatacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 22009550  T
383 tcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    |||||||||||| ||||||||| || ||||||||||||||||    
22009549 tcatttggctaagcatgcatctcatcctttgatctaatctga 22009508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 282 - 424
Target Start/End: Original strand, 9043800 - 9043943
Alignment:
282 caatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcg 380  Q
    |||||||||||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| |||| ||||||||| |||||||||     
9043800 caatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatct 9043899  T
381 catcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    |||||||||||||| ||||||||| || ||||||||||||||||    
9043900 catcatttggctaagcatgcatctcatcctttgatctaatctga 9043943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 7473610 - 7473469
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca 382  Q
    |||||||||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| |||| ||||||||| ||||||||| ||    
7473610 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 7473511  T
383 tcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    |||||| ||||| ||||||||| || ||||||||||||||||    
7473510 tcatttagctaagcatgcatctcatcctttgatctaatctga 7473469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 424
Target Start/End: Complemental strand, 30442667 - 30442527
Alignment:
285 tcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcat 383  Q
    |||| |||||||  ||||||||||||||||| ||||||  ||| || |  ||||||||||||||||| ||| |||| ||||||||| ||||||||| |||    
30442667 tcatgcttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 30442568  T
384 catttggctaaacatgcatcttattctttgatctaatctga 424  Q
    ||||||||||| ||||||||| || ||||||||||||||||    
30442567 catttggctaagcatgcatctcatcctttgatctaatctga 30442527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 19085498 - 19085420
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca 362  Q
    |||||||||||||  ||||||||||||||||| ||||||||||| || |  ||||||||||||||||| ||| ||||||    
19085498 atcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaca 19085420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 26841070 - 26840989
Alignment:
299 aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatc 379  Q
    ||||||||||||||||| |||||| |||| || |  ||||||||||||||||| ||| | |||||||||||  |||||||||    
26841070 aatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatc 26840989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 412
Target Start/End: Original strand, 10092512 - 10092641
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca 382  Q
    |||||||||||||  ||||||||||||||||||||||||||||| || |  |||| |||||||||||| ||| | |||||||||||| ||||||||| ||    
10092512 atcatacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatctca 10092611  T
383 tcatttggctaaacatgcatcttattcttt 412  Q
    |||||||||||| ||||||||| |||||||    
10092612 tcatttggctaagcatgcatctcattcttt 10092641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 299 - 424
Target Start/End: Complemental strand, 33045537 - 33045411
Alignment:
299 aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgcatcatttggctaaaca 397  Q
    ||||||||||||||||| ||||||||||| || |  ||||||||||||||||| ||| ||||  |||||||| ||||||||| |||||||||| ||| ||    
33045537 aatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttggatctcatcatttggttaagca 33045438  T
398 tgcatcttattctttgatctaatctga 424  Q
    ||||||| || ||||||||||||||||    
33045437 tgcatctcatcctttgatctaatctga 33045411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 283 - 394
Target Start/End: Original strand, 3065697 - 3065808
Alignment:
283 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgca 382  Q
    ||||||||||||||  ||||||||||||||| | ||||||||||| || |  ||||||||||||||||| ||| ||||||||||||  ||||||||| ||    
3065697 aatcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctccaaacaagggagaccgttggatctca 3065796  T
383 tcatttggctaa 394  Q
    ||||||||||||    
3065797 tcatttggctaa 3065808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 425
Target Start/End: Original strand, 8976419 - 8976546
Alignment:
299 aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgcatcatttggctaaaca 397  Q
    |||||||||||| |||| ||||||||||  || |  ||||||||||||||||| ||| ||||  |||||||  ||||||||| ||| |||| ||||||||    
8976419 aatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaaataagggagaccgttggatctcattatttagctaaaca 8976518  T
398 tgcatcttattctttgatctaatctgat 425  Q
    ||||||| || |||||||||||||||||    
8976519 tgcatctcatcctttgatctaatctgat 8976546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 16246701 - 16246780
Alignment:
283 aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca 362  Q
    ||||||||||||||  ||||||||| ||||||| ||||||||||| || |  ||| ||||||||||||| ||| ||||||    
16246701 aatcatacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatcctaaatggttttggctccaaaca 16246780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 30908475 - 30908412
Alignment:
299 aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca 362  Q
    ||||||||||||||||| ||||||||||| || |  |||| |||||||||||| ||| ||||||    
30908475 aatctttgttaacattgctaatgactttgcaaaccctaaatctaaatggttttggctccaaaca 30908412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 4660295 - 4660253
Alignment:
285 tcatacttatattcaatctttgttaacattgttaatgactttg 327  Q
    ||||||||||||  ||||||||||||||||| |||||||||||    
4660295 tcatacttatatataatctttgttaacattgctaatgactttg 4660253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 29863482 - 29863341
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca 382  Q
    |||||||||||||  ||||||||||||||||| | ||||||||| || |  ||||||||||||||||| ||| |||| ||||||||| ||||||||| ||    
29863482 atcatacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 29863383  T
383 tcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    |||||||||| | ||||||||| || ||||||||||||||||    
29863382 tcatttggctgagcatgcatctcatcctttgatctaatctga 29863341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 12506435 - 12506479
Alignment:
283 aatcatacttatattcaatctttgttaacattgttaatgactttg 327  Q
    ||||||||||||||  ||||||||||||||||| |||||||||||    
12506435 aatcatacttatatctaatctttgttaacattgctaatgactttg 12506479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 424
Target Start/End: Complemental strand, 11755 - 11614
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca 382  Q
    |||||||||||||  ||||||||||||||||| ||||||||||| || |  ||||||||| |||||||  || |||| ||||||||| ||||||||| ||    
11755 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctca 11656  T
383 tcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    |||||||| ||| ||||||||| || ||||||| ||||||||    
11655 tcatttggttaagcatgcatctcatcctttgatttaatctga 11614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 424
Target Start/End: Original strand, 654 - 795
Alignment:
284 atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgca 382  Q
    |||||||||||||   |||||||||||||||| ||||||  ||| || |  |||||||||||||||||  || ||||  |||||||| ||||||||| ||    
654 atcatacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaaataagggaggccgttggatctca 753  T
383 tcatttggctaaacatgcatcttattctttgatctaatctga 424  Q
    |||||||||||| ||||||||| || ||||||||||||||||    
754 tcatttggctaagcatgcatctcatcctttgatctaatctga 795  T

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Target: scaffold0157 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 14042 - 13998
Alignment:
283 aatcatacttatattcaatctttgttaacattgttaatgactttg 327  Q
    ||||||||||||||  ||||||||||||||||| |||||||||||    
14042 aatcatacttatatctaatctttgttaacattgctaatgactttg 13998  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 50990911 - 50990985
Alignment:
288 tacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca 362  Q
    |||||||||  ||||||||||||||||| | || |||||| || |  ||||||||||||||||| ||| ||||||    
50990911 tacttatatctaatctttgttaacattgctgataactttgcaaaccctaaacctaaatggttttggctccaaaca 50990985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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