View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6493_low_2 (Length: 420)
Name: NF6493_low_2
Description: NF6493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6493_low_2 |
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| [»] scaffold0009 (3 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 40063 - 39674
Alignment:
| Q |
18 |
acttgtaacatgcatagatagagatcctcaacaccgcgttgttttgctgcttcaacccatgtgtcaaaacaaataaaactattaggtctccagtttttag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063 |
acttgtaacatgcatagatagagatcctcaacaccgcgtcgttttgctgcttcaacccatgtgtcaaaacaaataaaactattaggtctccagtttttag |
39964 |
T |
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| Q |
118 |
atcggcagtcaagatgaaatgttttaagagtttgttctcgcgcgtgtgtggagagtagaattgtgtccacgaatctacgaaagtgaacccaagccttttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |
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| T |
39963 |
atcggcagtcaagatgaaatgttttaagagtttgttcttccgcgtgtgtggagagtagaactgtgtccacgaatctgcaaaagtgaacccaagccttttt |
39864 |
T |
|
| Q |
218 |
tgtgtaggctttgctatcgctgatgccaataactgcgagcgagtagaacagtaggaaccacctcttagaaagaatggtagttctgaaagcgtctttgatc |
317 |
Q |
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|||||||||| | ||||||| |||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
39863 |
cgtgtaggcttcgttatcgcttatgctaataactgcgagcgagtagaacaataagaaccacctcttggaaagaatggtagttctgaaagcgtatttgatc |
39764 |
T |
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| Q |
318 |
ggaagaaaagagagtatgtgaatgagtacgtcgtttgaaagatcattgatggacctcgactttgtcgtatgttttactcttttattgatc |
407 |
Q |
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| T |
39763 |
ggaagaaaagagagtatgtgaatgagtacgtcgtttgaaagatcattgatggacctcgactttgtcgtatgttttactcttttattgatc |
39674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 26 - 407
Target Start/End: Complemental strand, 33434 - 33053
Alignment:
| Q |
26 |
catgcatagatagagatcctcaacaccgcgttgttttgctgcttcaacccatgtgtcaaaacaaataaaactattaggtctccagtttttagatcggcag |
125 |
Q |
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||||||||||||||||||||| || || ||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||| ||||||||| ||||| |
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| T |
33434 |
catgcatagatagagatcctcgaccccacgtcgttttgctgctttaacccatgtgtcaaaacaacgaaaactattagctctccaatttttagattggcag |
33335 |
T |
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| Q |
126 |
tcaagatgaaatgttttaagagtttgttctcgcgcgtgtgtggagagtagaattgtgtccacgaatctacgaaagtgaacccaagccttttttgtgtagg |
225 |
Q |
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| |||||||| ||||||||||||||||| | |||||| |||||| || || |||| ||| |||| ||||||||||||||||||||||||||||||| |
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| T |
33334 |
acgagatgaaactttttaagagtttgttcttgtgcgtgtttggagattaaaaccgtgttcacaaatcgacgaaagtgaacccaagccttttttgtgtaga |
33235 |
T |
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| Q |
226 |
ctttgctatcgctgatgccaataactgcgagcgagtagaacagtaggaaccacctcttagaaagaatggtagttctgaaagcgtctttgatcggaagaaa |
325 |
Q |
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||||| |||||| ||| | ||||||||| |||||||| |||| | ||||||| | || ||||||| | |||||||||||| | |||||||||||||| |
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| T |
33234 |
ctttgttatcgcagatacgaataactgcaagcgagtaaaacaatgggaaccatcgtttcgaaagaaccgaagttctgaaagcatacttgatcggaagaaa |
33135 |
T |
|
| Q |
326 |
agagagtatgtgaatgagtacgtcgtttgaaagatcattgatggacctcgactttgtcgtatgttttactcttttattgatc |
407 |
Q |
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|||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33134 |
agagagtatgtgaatgagtaggtcgtttgcgagatcgttgatggacctcgactttgtcgtatgttttactcttttattgatc |
33053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 32 - 407
Target Start/End: Complemental strand, 21772 - 21406
Alignment:
| Q |
32 |
tagatagagatcctcaacaccgcgttgttttgctgcttcaacccatgtgtcaaaacaaataaaactattaggtctccagtttttagatcggcagtcaaga |
131 |
Q |
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||||||||||||||| || || ||| |||||||| |||| ||||||||||||||||| ||||||||||| |||||| | |||||| ||||||| ||| |
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| T |
21772 |
tagatagagatcctcgaccccacgtcgttttgcttcttcgacccatgtgtcaaaacagcgaaaactattagctctccaatgattagattggcagtcgaga |
21673 |
T |
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| Q |
132 |
tgaaatgttttaagagtttgttctcgcgcgtgtgtggagagtagaattgtgtccacgaatctacgaaagtgaacccaagccttttttgtgtaggctttgc |
231 |
Q |
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| T |
21672 |
tgaaatgttttaagagtttgtagctgcgcgtgtgtggagat---aactttgtccacaattctacgaaagtaaacccaagcctttttcgtgtagactcagt |
21576 |
T |
|
| Q |
232 |
tatcgctgatgccaataactgcgagcgagtagaacagtaggaaccacctcttagaaagaatggtagttctgaaagcgtctttgatcggaagaaaagagag |
331 |
Q |
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|||||| |||| |||||||||||| ||||| |||||| ||||||| | ||| ||||||| ||||||||||||||| | ||||||||||||||||||||| |
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| T |
21575 |
tatcgcatatgcgaataactgcgagagagtaaaacagtgggaaccatcgcttggaaagaacggtagttctgaaagcatatttgatcggaagaaaagagag |
21476 |
T |
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| Q |
332 |
tatgtgaatgagtacgtcgtttgaaagatcattgatggacctcgactttgtcgtatgttttactcttttattgatc |
407 |
Q |
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| T |
21475 |
aatgtaaatgagtaggtcgtctgtaagatcgttgatcgaactcga------cgcatgttttactcttttattgatc |
21406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 16259575 - 16259631
Alignment:
| Q |
275 |
ccacctcttagaaagaatggtagttctgaaagcgtctttgatcggaagaaaagagag |
331 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16259575 |
ccacctcttcgaaagaatggtagttctgaaagcgtctttgattggaagaaaagagag |
16259631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 16229266 - 16229322
Alignment:
| Q |
275 |
ccacctcttagaaagaatggtagttctgaaagcgtctttgatcggaagaaaagagag |
331 |
Q |
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| T |
16229266 |
ccacctcttcgaaagaatggtagttctgaaagcctctttgattggaagaaaagagag |
16229322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 1348798 - 1348842
Alignment:
| Q |
271 |
ggaaccacctcttagaaagaatggtagttctgaaagcgtctttga |
315 |
Q |
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| T |
1348798 |
ggaaccatctcttagaaagaatggtagttctgaaagcgtctttga |
1348842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 338
Target Start/End: Original strand, 19970572 - 19970635
Alignment:
| Q |
275 |
ccacctcttagaaagaatggtagttctgaaagcgtctttgatcggaagaaaagagagtatgtga |
338 |
Q |
| |
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|||| |||| ||||| | ||| ||||||||||||||| |||| |||||||||||||| |||||| |
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| T |
19970572 |
ccacgtcttggaaagcacggtggttctgaaagcgtctctgattggaagaaaagagagaatgtga |
19970635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 32243170 - 32243226
Alignment:
| Q |
275 |
ccacctcttagaaagaatggtagttctgaaagcgtctttgatcggaagaaaagagag |
331 |
Q |
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| T |
32243170 |
ccacctcttcgaaagaatggtagttctgaaagcgtctttgactggaagaaaaaagag |
32243226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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