View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6493_low_3 (Length: 348)
Name: NF6493_low_3
Description: NF6493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6493_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 25 - 348
Target Start/End: Original strand, 34458811 - 34459134
Alignment:
| Q |
25 |
ataattggaagagttggaagatactccaacagatgaagagaaagcaacatacaaggaggcaaagaagaagggatatgaaggacaatttattcttgaccag |
124 |
Q |
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| T |
34458811 |
ataattggaagagttggaagatactccaacagatgaagagaaagcaacatacaaggaggcaaagaagaagggatatgaagcacaatttattctcgaccag |
34458910 |
T |
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| Q |
125 |
tgtgtagatgcatcaaactttgaagagattgcaatggttgaaacatcaaaggatgcatgggatattattttatcaatgtcctatgctggagttgacaaac |
224 |
Q |
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| T |
34458911 |
tgtgtagatgcatcaaactttgaagagattgcaatggttgaaacatcaaaggatgcatgggatattattttttcaatgtcctatgctggagttgacaaac |
34459010 |
T |
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| Q |
225 |
tgaagaaggtgaaaaggtctcacatcaggtgatagttgataatatcttgagaagattgacatcaagacttcaccaccttgttgtggccattgaagaatca |
324 |
Q |
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| T |
34459011 |
tgaagaaggtgaaaaggtctcacatcaggtgatagttgataatatcttgagaagattgacatcaagacttcaccaccttgttgtggccattgaagaatca |
34459110 |
T |
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| Q |
325 |
aagaatattgtagaaatgaagttt |
348 |
Q |
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| T |
34459111 |
aagaatattgtagaaatgaagttt |
34459134 |
T |
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