View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6493_low_6 (Length: 236)
Name: NF6493_low_6
Description: NF6493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6493_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 26647134 - 26646911
Alignment:
| Q |
7 |
atgaaagaaagtggcacaagttcaatgaacagaatgatttgggaaaaggaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttg |
106 |
Q |
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|||||||||||||||| |||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
26647134 |
atgaaagaaagtggcaaaagttcaacgaacataatgattcgggaaaaggaagatgtaattaaggaagccttggtgcatgaattttttatagatggtgttg |
26647035 |
T |
|
| Q |
107 |
tgacatctcctttgctaatggagatattatacgatggttatgaatcaataaaggctaacaatactacggataagtttgtcatatttcaggaacattggtt |
206 |
Q |
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| T |
26647034 |
tgacatctcctttgctaatggagatattatgcgatggttatgaatcaataaaggctaacaatactacggataagtttgtcataattgagaaagattgttt |
26646935 |
T |
|
| Q |
207 |
tgagttggtgcttgatgatgatgt |
230 |
Q |
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|||||||||| ||||||||||||| |
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| T |
26646934 |
tgagttggtggttgatgatgatgt |
26646911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 215
Target Start/End: Original strand, 13682629 - 13682805
Alignment:
| Q |
39 |
aatgatttgggaaaaggaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatattatac |
138 |
Q |
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|||| |||||||| | ||||||||||||||||||||||||||| | || | |||||||||||||||||||||||||||||| ||||||||| |
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| T |
13682629 |
aatgttttgggaagaagaagatgtaattaaggaagccttggtggagcacttttttgtggttggtgttgtgacatctcctttgctaatggacatattatac |
13682728 |
T |
|
| Q |
139 |
gatggttatgaatcaataaaggctaacaatactacggataagtttgtcatatttcaggaacattggtttgagttggt |
215 |
Q |
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| T |
13682729 |
aatggttgtaaatcaatagatgctaacaatgctacggctaagtttgtcagaatcaaggaaaataggtttgagttggt |
13682805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 13669772 - 13669920
Alignment:
| Q |
39 |
aatgatttgggaaaaggaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatattatac |
138 |
Q |
| |
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|||| |||||||| | ||||||||||||||||||||||||||| | || | |||||||||||||||||||||||||||||| ||||||||| |
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| T |
13669772 |
aatgttttgggaagaagaagatgtaattaaggaagccttggtggagcacttttttgtggttggtgttgtgacatctcctttgctaatggacatattatac |
13669871 |
T |
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| Q |
139 |
gatggttatgaatcaataaaggctaacaatactacggataagtttgtca |
187 |
Q |
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|||||| | |||||||| | ||||||||| |||||| ||||||||||| |
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| T |
13669872 |
aatggttgtaaatcaatagatgctaacaatgctacggctaagtttgtca |
13669920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 215
Target Start/End: Original strand, 13689216 - 13689373
Alignment:
| Q |
55 |
gaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatattatacgatggttatgaatcaa |
154 |
Q |
| |
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||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| | ||||| |||||| | |||||| |
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| T |
13689216 |
gaagatgtaattaaggaagccttggtggagcacttttttctagatggtgttgtgacatctcctttgctaatggaca---tatacaatggttgtaaatcaa |
13689312 |
T |
|
| Q |
155 |
taaaggctaacaatactacggataagtttgtcatatttcaggaacattggtttgagttggt |
215 |
Q |
| |
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|| | ||||||||| |||||| ||||||||||| | | ||||| || ||||||||||||| |
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| T |
13689313 |
tagatgctaacaatgctacggctaagtttgtcagaatcaaggaaaataggtttgagttggt |
13689373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 22188367 - 22188262
Alignment:
| Q |
110 |
catctcctttgctaatggagatattatacgatggttatgaatcaataaaggctaacaatactacggataagtttgtcatatttcaggaacattggtttga |
209 |
Q |
| |
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||||||||||| ||||||| ||||||||| |||||||| |||||||||| ||||||||||||||| |||| |||| | | || ||||| || |||||| |
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| T |
22188367 |
catctcctttgataatggacatattatacaatggttatcaatcaataaatgctaacaatactacgtctaaggttgttagaattgaggaaaataggtttgg |
22188268 |
T |
|
| Q |
210 |
gttggt |
215 |
Q |
| |
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|||||| |
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|
| T |
22188267 |
gttggt |
22188262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 13687264 - 13687342
Alignment:
| Q |
55 |
gaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatat |
133 |
Q |
| |
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||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |||| |
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| T |
13687264 |
gaagatgtaattaaggaagccttggtggagcacttttttctagatggtgttgtgacatctcctttgctaatggacatat |
13687342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 187
Target Start/End: Complemental strand, 36992228 - 36992080
Alignment:
| Q |
39 |
aatgatttgggaaaaggaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatattatac |
138 |
Q |
| |
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|||| |||||||||| |||||||||||| ||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36992228 |
aatgttttgggaaaaacaagatgtaattatggaagccttggtgaagcacttctttgtagatggtgctgtgacatctcctttgctaatggagatattatac |
36992129 |
T |
|
| Q |
139 |
gatggttatgaatcaataaaggctaacaatactacggataagtttgtca |
187 |
Q |
| |
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|||||||| |||||||||| ||| |||||||||||| ||||||||||| |
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| T |
36992128 |
aatggttatcaatcaataaatgctgacaatactacggctaagtttgtca |
36992080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 187
Target Start/End: Complemental strand, 37001945 - 37001797
Alignment:
| Q |
39 |
aatgatttgggaaaaggaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatattatac |
138 |
Q |
| |
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|||| |||||||||| |||||||||||| ||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37001945 |
aatgttttgggaaaaacaagatgtaattatggaagccttggtgaagcacttctttgtagatggtgctgtgacatctcctttgctaatggagatattatac |
37001846 |
T |
|
| Q |
139 |
gatggttatgaatcaataaaggctaacaatactacggataagtttgtca |
187 |
Q |
| |
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|||||||| |||||||||| ||| |||||||||||| ||||||||||| |
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| T |
37001845 |
aatggttatcaatcaataaatgctgacaatactacggctaagtttgtca |
37001797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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