View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6493_low_8 (Length: 203)

Name: NF6493_low_8
Description: NF6493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6493_low_8
NF6493_low_8
[»] chr2 (22 HSPs)
chr2 (1-180)||(9292709-9292888)
chr2 (14-170)||(9316816-9316975)
chr2 (11-170)||(8572701-8572859)
chr2 (5-170)||(9060297-9060465)
chr2 (1-154)||(10372663-10372816)
chr2 (1-149)||(9321772-9321920)
chr2 (40-170)||(12018113-12018243)
chr2 (39-149)||(9329418-9329528)
chr2 (39-176)||(9357935-9358072)
chr2 (31-170)||(10336622-10336761)
chr2 (1-151)||(10353926-10354076)
chr2 (31-152)||(9275334-9275455)
chr2 (37-154)||(10348620-10348737)
chr2 (30-170)||(9283373-9283513)
chr2 (40-163)||(12011799-12011922)
chr2 (31-163)||(12005371-12005503)
chr2 (31-170)||(7114844-7114983)
chr2 (7-111)||(14551107-14551210)
chr2 (40-119)||(9365415-9365494)
chr2 (40-149)||(7612716-7612825)
chr2 (44-151)||(11986743-11986850)
chr2 (40-142)||(8578752-8578854)
[»] scaffold0667 (1 HSPs)
scaffold0667 (11-176)||(5250-5415)
[»] chr3 (1 HSPs)
chr3 (7-170)||(37463309-37463472)
[»] chr4 (2 HSPs)
chr4 (1-151)||(26575660-26575810)
chr4 (31-112)||(561981-562062)
[»] chr8 (1 HSPs)
chr8 (11-167)||(41965924-41966080)
[»] chr1 (4 HSPs)
chr1 (7-133)||(29452587-29452713)
chr1 (7-133)||(29424001-29424127)
chr1 (7-133)||(29467061-29467187)
chr1 (7-112)||(29442616-29442721)
[»] chr5 (1 HSPs)
chr5 (41-151)||(36225571-36225681)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 9292709 - 9292888
Alignment:
Q  1 tcgaatttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292709 tcgaatttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaa 9292808  T
Q  101 ttgatcggaatctgagaagtgattttactggtacgcgggagaagatttcggcgactatttctggcggaaggcggtccgcc 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292809 ttgatcggaatctgagaagtgattttactggtacgcgggagaagatttcggcgactatttctggcggaaggcggtccgcc 9292888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 9316816 - 9316975
Alignment:
Q  14 gaaggattaaggatcggttgagggaatt---tttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaa 110  Q
    |||||||||||||||| |||||||||||   |||||||||||||||  ||||| |||||||||| ||||  |||||||||||||||||| ||||||||||    
T  9316816 gaaggattaaggatcgattgagggaattatttttgaggtgaaggttgatgaagttgtgagaatctattaaagatttaagtgattttgaagttgatcggaa 9316915  T
Q  111 tctgagaagtgattttactggtacgcgggagaagatttcggcgactatttctggcggaag 170  Q
    || |||||||||||||||||||| | |||||||||||||||||| |||||| ||||||||    
T  9316916 tcggagaagtgattttactggtaagtgggagaagatttcggcgagtatttccggcggaag 9316975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 8572859 - 8572701
Alignment:
Q  11 gtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaa 110  Q
    |||||| ||||||||| || |||||||||||||||||||||||||| |||||| |||| ||||||||||  |||||||||||||||||| ||||||||||    
T  8572859 gtcgaatgattaaggaacgattgagggaatttttgaggtgaaggttggtgaagttgtgggaatcgattatagatttaagtgattttgaagttgatcggaa 8572760  T
Q  111 tctgagaagtgattttactggtacgcgggagaagatttcggcgactatttctggcggaag 170  Q
    || ||||||||| |||||||||| ||||||||||||||| | ||||||||| | ||||||    
T  8572759 tcggagaagtga-tttactggtatgcgggagaagatttcagtgactatttccgacggaag 8572701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 9060465 - 9060297
Alignment:
Q  5 atttgtgtcgaaggattaaggatcggttgagggaatt---tttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaat 101  Q
    ||||||||||||||||||   |||| ||||||| |||   |||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| |    
T  9060465 atttgtgtcgaaggattataaatcgattgaggggattatttttgaggtaaaggttagtgaagttgtgagaatcgattaaggatttaagtgattttgaagt 9060366  T
Q  102 tgatcggaatctgagaagtgattttactggtacgcgggagaagatttcggcgactatttctggcggaag 170  Q
    ||||||||||| |||||||||||  || |||| |||||||||||||||||| | |||||| ||||||||    
T  9060365 tgatcggaatcggagaagtgattgaaccggtaagcgggagaagatttcggcaagtatttccggcggaag 9060297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 10372663 - 10372816
Alignment:
Q  1 tcgaatttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaa 100  Q
    ||||||||| || |||||||||||||||| ||||||||||||| ||||||||||||  ||||  |||| ||||||||||  ||||||| ||||||||||     
T  10372663 tcgaatttgcgttgaaggattaaggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaatgatttaaatgattttgaag 10372762  T
Q  101 ttgatcggaatctgagaagtgattttactggtacgcgggagaagatttcggcga 154  Q
    |||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||    
T  10372763 ttgatcggaatcggagaagtgattttaccggtaagcgggagaagacttcggcga 10372816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 9321772 - 9321920
Alignment:
Q  1 tcgaatttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaa 100  Q
    |||||||||||| ||| ||||||||||||  |||||||||||||||| ||||||||  |||||  |||||||||||||| ||||||||||||||| |||     
T  9321772 tcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgagaatcgattatggatttaagtgatttagaag 9321871  T
Q  101 ttgatcggaatctgagaagtgattttactggtacgcgggagaagatttc 149  Q
    |||||||||||  ||||||||||||||| |||| |||||||| ||||||    
T  9321872 ttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 9321920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 12018243 - 12018113
Alignment:
Q  40 tttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcggg 139  Q
    |||||||| ||||| || |||||| ||||||||||||||| ||||||||||||||||||| |||| |||||||  ||||||||||||||||||| |||||    
T  12018243 tttttgagttgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagcggg 12018144  T
Q  140 agaagatttcggcgactatttctggcggaag 170  Q
    ||||||||||||||| ||| |||| ||||||    
T  12018143 agaagatttcggcgagtatgtctgacggaag 12018113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 39 - 149
Target Start/End: Original strand, 9329418 - 9329528
Alignment:
Q  39 atttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcgg 138  Q
    ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| ||||||| ||||||||||||||| |||| ||||    
T  9329418 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 9329517  T
Q  139 gagaagatttc 149  Q
    |||| ||||||    
T  9329518 gagaggatttc 9329528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 39 - 176
Target Start/End: Original strand, 9357935 - 9358072
Alignment:
Q  39 atttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcgg 138  Q
    ||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||| ||||||  || | |||||||||||||||||||| ||||    
T  9357935 atttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 9358034  T
Q  139 gagaagatttcggcgactatttctggcggaaggcggtc 176  Q
     | || |||| ||||| |||||| ||||||||||||||    
T  9358035 aacaaaattttggcgagtatttccggcggaaggcggtc 9358072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 10336622 - 10336761
Alignment:
Q  31 ttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactg 130  Q
    |||||||||||||  |||||||||||  ||||  ||||||||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||| |    
T  10336622 ttgagggaattttgaaggtgaaggttgatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccg 10336721  T
Q  131 gtacgcgggagaagatttcggcgactatttctggcggaag 170  Q
    |||  |||||||||||||||| ||  ||||| ||||||||    
T  10336722 gtaaacgggagaagatttcggagagaatttccggcggaag 10336761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 10353926 - 10354076
Alignment:
Q  1 tcgaatttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaa 100  Q
    |||||||||  |||||| ||||||||| | ||| |||||||| |||||||||||||  ||||  |||  ||||||||||||||||||| ||||||||||     
T  10353926 tcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaag 10354025  T
Q  101 ttgatcggaatctgagaagtgattttactggtacgcgggagaagatttcgg 151  Q
    ||||||||||||||||||||||| |||| |||| |||||| | ||||||||    
T  10354026 ttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttcgg 10354076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 9275334 - 9275455
Alignment:
Q  31 ttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactg 130  Q
    ||||||||||||||||| ||||||||  ||||| |||| ||||| || |  ||||||||||||||||| ||||||||||||| ||||||||||| |||||    
T  9275334 ttgagggaatttttgagatgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtactg 9275433  T
Q  131 gtacgcgggagaagatttcggc 152  Q
    |||  |||||||||||||||||    
T  9275434 gtaaccgggagaagatttcggc 9275455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 10348620 - 10348737
Alignment:
Q  37 gaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgc 136  Q
    |||||||| |||||||||||  ||||  || | |||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||| |||| ||    
T  10348620 gaattttttaggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagc 10348719  T
Q  137 gggagaagatttcggcga 154  Q
    ||||||||||||||||||    
T  10348720 gggagaagatttcggcga 10348737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 9283513 - 9283373
Alignment:
Q  30 gttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttact 129  Q
    |||||||||| ||||||||||||||||  ||||  |||||||||| |||||||||  ||||||||| ||| |||||||||||| ||| |||||||| |||    
T  9283513 gttgagggaacttttgaggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaact 9283414  T
Q  130 ggtacgcgggagaagatttcggcgactatttctggcggaag 170  Q
    |||| || ||||||||||||||| | ||| || ||||||||    
T  9283413 ggtaagcaggagaagatttcggcaagtatgtccggcggaag 9283373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 40 - 163
Target Start/End: Complemental strand, 12011922 - 12011799
Alignment:
Q  40 tttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcggg 139  Q
    |||||||||||||| || |||||| ||||||||||||||| ||||||||||||||||||| |||| ||||||| ||||||||||| |    ||| |||||    
T  12011922 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgattgtggatgtaagcggg 12011823  T
Q  140 agaagatttcggcgactatttctg 163  Q
    |||||||||||| || ||||||||    
T  12011822 agaagatttcggtgagtatttctg 12011799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 12005503 - 12005371
Alignment:
Q  31 ttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactg 130  Q
    ||||| |||||||| || |||||||| |||||| ||||||||||||||| ||||||||| |||| |||| |||| ||||||| ||||||||||| |   |    
T  12005503 ttgagagaattttttagatgaaggttggtgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggag 12005404  T
Q  131 gtacgcgggagaagatttcggcgactatttctg 163  Q
    ||| ||||||||||||||||| || ||||||||    
T  12005403 gtaagcgggagaagatttcggtgagtatttctg 12005371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 7114983 - 7114844
Alignment:
Q  31 ttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactg 130  Q
    |||| ||||||||| || ||||||||  ||||  |||| |||||||||| ||||||||||||||||||| ||||||||||||  |||||||||  |||||    
T  7114983 ttgaaggaatttttaagatgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgatcgtactg 7114884  T
Q  131 gtacgcgggagaagatttcggcgactatttctggcggaag 170  Q
    ||| ||| |||||||||||||  | |||||| ||||||||    
T  7114883 gtaggcgagagaagatttcggatagtatttccggcggaag 7114844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 14551107 - 14551210
Alignment:
Q  7 ttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatc 106  Q
    |||||||||||||||||||| |  |||||||||||||| |||||||| ||  ||||| |||| |||||||||||||||| ||||||||||||| ||||||    
T  14551107 ttgtgtcgaaggattaaggaacaattgagggaattttt-aggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaagttgatc 14551205  T
Q  107 ggaat 111  Q
    |||||    
T  14551206 ggaat 14551210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 9365415 - 9365494
Alignment:
Q  40 tttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaag 119  Q
    |||||||| || ||||| |||||| ||||||||||||||| ||||||||||||||||||  |||||||||||| ||||||    
T  9365415 tttttgagatggaggttggtgaaggtgtgagaatcgattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 149
Target Start/End: Original strand, 7612716 - 7612825
Alignment:
Q  40 tttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcggg 139  Q
    ||||||||||||||||| |||||| |||| ||||| |||| ||||||||| ||||| |||||||||||||||| ||| || | || ||| |||| ||| |    
T  7612716 tttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagcgag 7612815  T
Q  140 agaagatttc 149  Q
    ||| ||||||    
T  7612816 agaggatttc 7612825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 11986850 - 11986743
Alignment:
Q  44 tgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcgggagaa 143  Q
    |||||||||| || |||||| |||||||||| |||| ||||||||| |||| |||| |||| ||||||| ||||||||||| |    ||| |||||||||    
T  11986850 tgaggtgaagattggtgaagttgtgagaatcaattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaa 11986751  T
Q  144 gatttcgg 151  Q
    ||||||||    
T  11986750 gatttcgg 11986743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 8578854 - 8578752
Alignment:
Q  40 tttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcggg 139  Q
    |||||||||| | | || |||||| |||| ||||| || | ||||  ||||||||| |||||||||||||||| |||||| |||| ||| |||| |||||    
T  8578854 tttttgaggtaatgtttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagcggg 8578755  T
Q  140 aga 142  Q
    |||    
T  8578754 aga 8578752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 5250 - 5415
Alignment:
Q  11 gtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaa 110  Q
    |||||||||| |||||||  ||||||||||||||| ||||||||||  ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  5250 gtcgaaggatgaaggatctattgagggaatttttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaa 5349  T
Q  111 tctgagaagtgattttactggtacgcgggagaagatttcggcgactatttctggcggaaggcggtc 176  Q
    || ||||||||||||||| |||| ||||||||||||||| |||| | | || ||||||||||||||    
T  5350 tcggagaagtgattttaccggtaagcgggagaagatttctgcgagtgtgtccggcggaaggcggtc 5415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 37463309 - 37463472
Alignment:
Q  7 ttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatc 106  Q
    |||| ||||| ||||| |||| | ||||||| ||||||||| ||||||||  ||||| |||||||||||||||  |||||||||||||||||| ||||||    
T  37463309 ttgtttcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatc 37463408  T
Q  107 ggaatctgagaagtgattttactggtacgcgggagaagatttcggcgactatttctggcggaag 170  Q
    |||||| ||||||||||| ||||||||  ||||||| ||||||||||| |||||| ||||||||    
T  37463409 ggaatcggagaagtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaag 37463472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 9e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 26575660 - 26575810
Alignment:
Q  1 tcgaatttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaa 100  Q
    |||||||||  |||||||||||||||||| ||| |||||||| |||||||||||||  ||||  |||  |||||||||| | |||||||||||||||||     
T  26575660 tcgaatttgaatcgaaggattaaggatcgattgggggaatttctgaggtgaaggttgatgaatttgtaggaatcgattaagaatttaagtgattttgaag 26575759  T
Q  101 ttgatcggaatctgagaagtgattttactggtacgcgggagaagatttcgg 151  Q
    |||||||||||| |||||||||| |||| ||||  ||||||||||||||||    
T  26575760 ttgatcggaatcggagaagtgatattaccggtaaacgggagaagatttcgg 26575810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 561981 - 562062
Alignment:
Q  31 ttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatc 112  Q
    |||||||| |||||||||||||||||||||||| |||| |||||||||| |||||||||  |||||||| || |||||||||    
T  561981 ttgagggagtttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagccattttgaacttaatcggaatc 562062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 41966080 - 41965924
Alignment:
Q  11 gtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaa 110  Q
    ||||||||||||||||||| |||||||| ||| |||||||||||||  ||||| |||| |||||||||| ||||  ||||||||| ||  ||||||||||    
T  41966080 gtcgaaggattaaggatcgattgagggattttctgaggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaa 41965981  T
Q  111 tctgagaagtgattttactggtacgcgggagaagatttcggcgactatttctggcgg 167  Q
    || ||||| ||||||||| ||||   ||||||||||||| |||| ||||||||||||    
T  41965980 tcggagaactgattttaccggtaatagggagaagatttcagcgagtatttctggcgg 41965924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 29452713 - 29452587
Alignment:
Q  7 ttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatc 106  Q
    |||||||||||||||||||| || ||||||||||||| ||||||||| ||  ||||| ||||||||||||||||||||| ||||||||||||  |||| |    
T  29452713 ttgtgtcgaaggattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaac 29452614  T
Q  107 ggaatctgagaagtgattttactggta 133  Q
    |||||| ||| || |||| ||| ||||    
T  29452613 ggaatcggaggagggattgtaccggta 29452587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 29424001 - 29424127
Alignment:
Q  7 ttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatc 106  Q
    |||||||||||||||||||| || |||| |||||| | ||||||||| ||  |||||||||| ||||||||||| |||| ||||||||||||  |||| |    
T  29424001 ttgtgtcgaaggattaaggaacgattgaaggaattatggaggtgaagcttgatgaagctgtgggaatcgattagagattgaagtgattttgaggttgaac 29424100  T
Q  107 ggaatctgagaagtgattttactggta 133  Q
    |||||| ||| || |||| ||| ||||    
T  29424101 ggaatcggaggagggattgtaccggta 29424127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 29467187 - 29467061
Alignment:
Q  7 ttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatc 106  Q
    |||||||||||||||||| | || ||||||||||||  ||||||||| ||  ||||| |||| |||||||||||||||| ||||||||||||  |||| |    
T  29467187 ttgtgtcgaaggattaagaaacgattgagggaatttcggaggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaggttgaac 29467088  T
Q  107 ggaatctgagaagtgattttactggta 133  Q
    |||||| ||| || |||| ||| ||||    
T  29467087 ggaatcggaggagggattgtaccggta 29467061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 29442721 - 29442616
Alignment:
Q  7 ttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatc 106  Q
    |||||||||||||||||||| || |||||| |||||| ||||||||| ||  ||||| | || |||||||||||||||| ||||||||| ||  |||| |    
T  29442721 ttgtgtcgaaggattaaggaacgattgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaac 29442622  T
Q  107 ggaatc 112  Q
    ||||||    
T  29442621 ggaatc 29442616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 36225571 - 36225681
Alignment:
Q  41 ttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcggga 140  Q
    ||||||||||||| ||||||||| |||| ||||||||||  |||||||||||||||||| |||||||||||| ||| || ||||  ||| ||| ||||||    
T  36225571 ttttgaggtgaagattagtgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattgcactagtaagcggga 36225670  T
Q  141 gaagatttcgg 151  Q
    || ||||||||    
T  36225671 gaggatttcgg 36225681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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