View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6494_high_1 (Length: 806)

Name: NF6494_high_1
Description: NF6494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6494_high_1
NF6494_high_1
[»] chr3 (5 HSPs)
chr3 (13-292)||(1036223-1036502)
chr3 (488-663)||(1035997-1036169)
chr3 (730-788)||(1035933-1035991)
chr3 (570-664)||(33994233-33994327)
chr3 (250-283)||(9584509-9584542)
[»] chr1 (2 HSPs)
chr1 (510-663)||(41633349-41633502)
chr1 (564-663)||(10196173-10196272)
[»] chr8 (1 HSPs)
chr8 (513-663)||(12692571-12692720)
[»] chr2 (3 HSPs)
chr2 (531-663)||(24099050-24099182)
chr2 (610-661)||(5099545-5099597)
chr2 (564-614)||(18886307-18886357)
[»] chr6 (2 HSPs)
chr6 (564-664)||(3740910-3741010)
chr6 (419-460)||(3741243-3741284)
[»] chr4 (1 HSPs)
chr4 (626-663)||(17074411-17074448)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 1036502 - 1036223
Alignment:
Q  13 aatattaccttctatgtctacctgccatttataattcatccattctccaaataggcacacagtatattaagatccctaaaaagaatgaggaacatattgt 112  Q
    |||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  1036502 aatattaccttctatggctacctgacatttatatttcatccattctccaaataggcacagagtatattaagatccctaaaaagaacgaggaacatattgt 1036403  T
Q  113 ggttatagtataaacatatgctctccaagggtgctcgctttctctcatttcgttgaactcggaaacaaaggtagagacagtactcaaacaacccaaaagg 212  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| || |||    
T  1036402 gattatagtataaacatatgctctccaagggtgctcgctttctctcatttcattgaactcggcaacaaaggtagagacagtactcaaacaaccgaacagg 1036303  T
Q  213 ccaaactgtatgccttttaaaatagtatcacaatctctggtgttcacctacatcaaacaagtgagatatataagaaatga 292  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1036302 ccaaactgtatgccttttacaatagtatcacaatccctggtgttcacctacatcaaacaagtgagatatataagaaatga 1036223  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 488 - 663
Target Start/End: Complemental strand, 1036169 - 1035997
Alignment:
Q  488 atgaaaggttgcgtcctcgttatcaacgagggtctaactgtgatgttgtgtgatgaaacattctttataccataatattcaatgatcatgtatacaaagt 587  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||  |  ||||||||||||||  |||| |||    
T  1036169 atgaaagattgtgtcctcgttatcaacgagggtctaactgtgatgttgagtggt-aaacattctttatacctcatcattcaatgatcatg--tacacagt 1036073  T
Q  588 tgtaacagaagtggactaaaaatgaaaattggttcattggtgtaaacatttttaacgataaatgattaatttgaca 663  Q
    ||||||||||||||||||||||||||| ||||||||     |||||||||||||  ||||| |||| |||||||||    
T  1036072 tgtaacagaagtggactaaaaatgaaagttggttcaacttcgtaaacatttttatagataattgataaatttgaca 1035997  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 730 - 788
Target Start/End: Complemental strand, 1035991 - 1035933
Alignment:
Q  730 agaaatcctattcacgaatataaacaaaactacttctgattctttgaaaaccagtttat 788  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  1035991 agaaatcctattcatgaatataaacaaaactacttctgattcttagaaaaccagcttat 1035933  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 570 - 664
Target Start/End: Original strand, 33994233 - 33994327
Alignment:
Q  570 tgatcatgtatacaaagttgtaacagaagtggactaaaaatgaaaattggttcattggtgtaaacatttttaacgataaatgattaatttgacaa 664  Q
    |||| ||||| ||||| |||||| ||||||||| ||| || |||| |||| ||| |||  | ||||||||||| |||||||||||||||||||||    
T  33994233 tgattatgtacacaaatttgtaatagaagtggattaagaaagaaagttggatcaatggattgaacatttttaaagataaatgattaatttgacaa 33994327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 9584509 - 9584542
Alignment:
Q  250 tggtgttcacctacatcaaacaagtgagatatat 283  Q
    |||||||||||||||||||||| |||||||||||    
T  9584509 tggtgttcacctacatcaaacaggtgagatatat 9584542  T

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Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 510 - 663
Target Start/End: Original strand, 41633349 - 41633502
Alignment:
Q  510 tcaacgagggtctaactgtgatgttgtgtgatgaaacattctttataccataatattcaatgatcatgtatacaaagttgtaacagaagtggactaaaaa 609  Q
    |||||||| ||||||||||| || || ||| |||||| |||||||||  |||  |||||||||||||||| ||||| || |||||||||| |||||| ||    
T  41633349 tcaacgagagtctaactgtggtgctgagtggtgaaacgttctttatagtatatcattcaatgatcatgtacacaaatttataacagaagtcgactaagaa 41633448  T
Q  610 tgaaaattggttcattggtgtaaacatttttaacgataaatgattaatttgaca 663  Q
    | |||  |||||||  |||||||||||||| || |||||| || ||||||||||    
T  41633449 taaaagatggttcaaaggtgtaaacattttgaaagataaaagaataatttgaca 41633502  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 564 - 663
Target Start/End: Complemental strand, 10196272 - 10196173
Alignment:
Q  564 attcaatgatcatgtatacaaagttgtaacagaagtggactaaaaatgaaaattggttcattggtgtaaacatttttaacgataaatgattaatttgaca 663  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||||||||  ||||| |||| |||||| |||||| || ||||||||||    
T  10196272 attcaattatcatgtacacaaatttgtaacagaagtggactaaaaatgaaagttggttcaacggtgtgaacaattttaaagataaaagactaatttgaca 10196173  T

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Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 513 - 663
Target Start/End: Complemental strand, 12692720 - 12692571
Alignment:
Q  513 acgagggtctaactgtgatgttgtgtgatgaaacattctttataccataatattcaatgatcatgtatacaaagttgtaacagaagtggactaaaaatga 612  Q
    ||||| ||||||||||| |||||  || ||||||||| ||||||  |||  ||||| |||||| | | ||||| |||||||| | ||| ||||| |||||    
T  12692720 acgagagtctaactgtgttgttgaatggtgaaacattatttatagtatatcattcattgatcacgcacacaaatttgtaacata-gtgaactaagaatga 12692622  T
Q  613 aaattggttcattggtgtaaacatttttaacgataaatgattaatttgaca 663  Q
    || |||||||| |||||||||||||||||| |||||| || ||||||||||    
T  12692621 aagttggttcaatggtgtaaacatttttaaagataaaagactaatttgaca 12692571  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 531 - 663
Target Start/End: Complemental strand, 24099182 - 24099050
Alignment:
Q  531 tgttgtgtgatgaaacattctttataccataatattcaatgatcatgtatacaaagttgtaacagaagtggactaaaaatgaaaattggttcattggtgt 630  Q
    ||||| ||| |||| |||||||||||  |||  | |||||||||||||| | ||| |||||||| ||| ||||||| ||||||| ||||||||  ||||     
T  24099182 tgttgagtggtgaatcattctttatagtatatcactcaatgatcatgtacataaatttgtaacaaaagcggactaagaatgaaagttggttcaacggtgc 24099083  T
Q  631 aaacatttttaacgataaatgattaatttgaca 663  Q
    |||||||||||| |  ||| || ||||||||||    
T  24099082 aaacatttttaaaggcaaaagactaatttgaca 24099050  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 610 - 661
Target Start/End: Original strand, 5099545 - 5099597
Alignment:
Q  610 tgaaaattggttcatt-ggtgtaaacatttttaacgataaatgattaatttga 661  Q
    |||||||||||||||  ||||||||||||||||| |||||| |||||||||||    
T  5099545 tgaaaattggttcatacggtgtaaacatttttaaagataaaagattaatttga 5099597  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 564 - 614
Target Start/End: Complemental strand, 18886357 - 18886307
Alignment:
Q  564 attcaatgatcatgtatacaaagttgtaacagaagtggactaaaaatgaaa 614  Q
    |||||||||||||||| ||||| |||||||| ||||| ||||||| |||||    
T  18886357 attcaatgatcatgtacacaaatttgtaacaaaagtgaactaaaagtgaaa 18886307  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 564 - 664
Target Start/End: Complemental strand, 3741010 - 3740910
Alignment:
Q  564 attcaatgatcatgtatacaaagttgtaacagaagtggactaaaaatgaaaattggttcattggtgtaaacatttttaacgataaatgattaatttgaca 663  Q
    ||||||||||||||||  |||| | | || | ||||||||||| ||||||| ||| |||  |||| ||||||||||||| |||||| || | ||||||||    
T  3741010 attcaatgatcatgtactcaaattagcaatataagtggactaagaatgaaagttgattctatggtataaacatttttaaagataaaggactgatttgaca 3740911  T
Q  664 a 664  Q
    |    
T  3740910 a 3740910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 460
Target Start/End: Complemental strand, 3741284 - 3741243
Alignment:
Q  419 tttcgtgtcaagtgagtcctttatgtttaaaaacatcaacaa 460  Q
    ||||||||||||| |||| ||||||||||||||| |||||||    
T  3741284 tttcgtgtcaagttagtcttttatgtttaaaaacgtcaacaa 3741243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 663
Target Start/End: Complemental strand, 17074448 - 17074411
Alignment:
Q  626 ggtgtaaacatttttaacgataaatgattaatttgaca 663  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  17074448 ggtgtaaacatttttaaggataaatgactaatttgaca 17074411  T

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