View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6494_high_12 (Length: 249)
Name: NF6494_high_12
Description: NF6494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6494_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 39092406 - 39092166
Alignment:
| Q |
1 |
ttggagtttttcagttgaaatattaacttnnnnnnntcgggattattaatgatttccagatttttctaaaattcggaattnnnnnnncctggcaaattat |
100 |
Q |
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| T |
39092406 |
ttggagttttttagttgaaatattaacttaaaaaaatcgggattattaatgatttccagatttttctaaaattcggacttaaaaaaacctggcaaattat |
39092307 |
T |
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| Q |
101 |
aagaattttttactttaaatatccatttgcaaatttggaggtaggggtggaaagtagaaagtactttgggcttattaagttccctcaaatgggccatcag |
200 |
Q |
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| T |
39092306 |
aagaattttttactttaaatatc-atttgcaaatttggaggtaggggtggaaagtagaaagtactttgggcttattaagttccctcaaatgggccatcag |
39092208 |
T |
|
| Q |
201 |
gctagcatatcatcacattatttttggaaatttgttcatctc |
242 |
Q |
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| T |
39092207 |
gctagcatatcatcacattatttttgaaaatttgttcatctc |
39092166 |
T |
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