View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6494_high_13 (Length: 243)
Name: NF6494_high_13
Description: NF6494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6494_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1104701 - 1104462
Alignment:
| Q |
1 |
aactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaaccactaccatctcccctaacatctaagtttgaataagccatgcaagaa |
100 |
Q |
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| T |
1104701 |
aactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaaccactaccatctcccctaacatctaagtttgaataagccatgcaagaa |
1104602 |
T |
|
| Q |
101 |
caattttccaagcatttgttcttacaattctcaagtgtcatattaccatcaacccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1104601 |
caattttccaagcatttgttcttacaattctcaagtgtcatattaccatcaacccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaa |
1104502 |
T |
|
| Q |
201 |
aaccatcattcacaccacaattccatgtttcttcgccttt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
1104501 |
aaccatcattcacaccacaattccatgtttcttcgccttt |
1104462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 1047649 - 1047433
Alignment:
| Q |
26 |
ataagatcaccaaaccatatagaacaaccactaccatctcccctaacatctaagtttgaataagccatgcaagaacaattttccaagcatttgttcttac |
125 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
1047649 |
ataagatcaccaaaccatatagaacaaccactgccatctccagccacatccaagtttgaataagccatgcaagaacaattttccaagcatttatttttac |
1047550 |
T |
|
| Q |
126 |
aattctcaagtgtcatattaccatcaacccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccacaattcca |
225 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
1047549 |
aattctcaagtgtcatattagcatcaacccaagtatgtgttgtatctggcaatttcaatccagaaaatgttccaaaaccatcattcacaccacaattcca |
1047450 |
T |
|
| Q |
226 |
tgtttcttcgcctttgc |
242 |
Q |
| |
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||||||||||||||||| |
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| T |
1047449 |
tgtttcttcgcctttgc |
1047433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 1072459 - 1072246
Alignment:
| Q |
26 |
ataagatcaccaaaccatatagaacaaccactaccatctcccctaacatctaagtttgaataagccatgcaagaacaattttccaagcatttgttcttac |
125 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| | | |||| |||||||||||||||||| |||||||||| |||||||||||| ||||||| |
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| T |
1072459 |
ataagatcaccaaaccatatggaacatccactaccatcactc---acatttaagtttgaataagccatacaagaacaatcttccaagcatttattcttac |
1072363 |
T |
|
| Q |
126 |
aattctcaagtgtcatattaccatcaacccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccacaattcca |
225 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| | ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
1072362 |
aattctcaagtgtcatattagcatcaacccaagtatgtgttgtatctggcaatttcaatccagaaaatgttctaaaacgatcattcacaccacaattcca |
1072263 |
T |
|
| Q |
226 |
tgtttcttcgcctttgc |
242 |
Q |
| |
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||||||||| ||||||| |
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| T |
1072262 |
tgtttcttcacctttgc |
1072246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 1088145 - 1087930
Alignment:
| Q |
4 |
tgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaaccactaccatctcccctaacatctaagtttgaataagccatgcaagaacaa |
103 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
1088145 |
tgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaaccactaccatctccagccacatccaagtttgaataagccatgcaagaacaa |
1088046 |
T |
|
| Q |
104 |
ttttccaagcatttgttcttacaattctcaagtgtcatattaccatcaacccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaac |
203 |
Q |
| |
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| |||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||| ||| |||||||||||||| | | ||||| || |||||| |
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| T |
1088045 |
tcttccaagcatttattcttacaattctcaagtgtcatatttgcatcaacccaagtatgtgatgtatctggcaatttcaatccataaaatcttacaaaac |
1087946 |
T |
|
| Q |
204 |
catcattcacaccaca |
219 |
Q |
| |
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||||||||| ||||| |
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| T |
1087945 |
tatcattcactccaca |
1087930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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