View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6494_high_18 (Length: 217)
Name: NF6494_high_18
Description: NF6494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6494_high_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 13266854 - 13267061
Alignment:
| Q |
10 |
gcataggcactagcaccggcaacaattagttttggcctgaagagggtagcagatttctctagctgcattttaaagttgtttaattaaataaaagcattga |
109 |
Q |
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| T |
13266854 |
gcataggcactagcaccggcaacaattagttttggcctgaagagggtagcagatttctctagctgcattttaaagttgtttaattaaataaaagcattga |
13266953 |
T |
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| Q |
110 |
gtatgatgaagctaattgtgttctgaaacctaacttagaaatgagcattatttccaaaagaagctgcaaacaaacctggtcataatcaatgtatcctgtg |
209 |
Q |
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| T |
13266954 |
gtatgatgaagctaattgtgttcagaaacctaacttagaaatgagcattatttccaaaagaaactgcaaacaaacctggtcataatcaatgtatcctgtg |
13267053 |
T |
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| Q |
210 |
ctttcatc |
217 |
Q |
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| T |
13267054 |
ctttcatc |
13267061 |
T |
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