View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6494_high_9 (Length: 328)

Name: NF6494_high_9
Description: NF6494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6494_high_9
NF6494_high_9
[»] chr1 (1 HSPs)
chr1 (13-311)||(5375296-5375594)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 5375594 - 5375296
Alignment:
Q  13 tgaatgctgctaccactggtgaaggttgaacttgtaagtgtgtgcccccaaaaacaagtttagctcttggatttttcgtagtaaaaacgtagtcttttaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375594 tgaatgctgctaccactggtgaaggttgaacttgtaagtgtgtgcccccaaaaacaagtttagctcttggatttttcgtagtaaaaacgtagtcttttaa 5375495  T
Q  113 aacagtgcttgatttttgacccaatgctgctgctggtagaagatgagaatcagcaattaactcttcaccatatgcttcattgtttaccaaaatcattcca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375494 aacagtgcttgatttttgacccaatgctgctgctggtagaagatgagaatcagcaattaactcttcaccatatgcttcattgtttaccaaaatcattcca 5375395  T
Q  213 actccaccagcattttttacaacaagacccttttcaactcttgagtttccacctctttcacatatcacaattttacctaaaacttttgaacttgttaaa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375394 actccaccagcattttttacaacaagacccttttcaactcttgagtttccacctctttcacatatcacaattttacctaaaacttttgaacttgttaaa 5375296  T

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