View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6494_low_12 (Length: 404)
Name: NF6494_low_12
Description: NF6494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6494_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 36635747 - 36635469
Alignment:
| Q |
1 |
ccaaaatgagatattaatcagaacaaatcttttatatatatatccacattttaattactttcatttattctaaaataacaaaaacaaggaaacactatat |
100 |
Q |
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| T |
36635747 |
ccaaaatgagatattaatcagaacaaatcttttatatat----ccacattttaa--actttcatttattctaaaataacaaaaacaaggaaacactata- |
36635655 |
T |
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| Q |
101 |
aatatgtgactttaatttgatcttgatctatagaagcattcgagttggatccctaactaaaatagtgtttgaacaaatatattaatttaccttcccacca |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36635654 |
-atatgtgactttaatttgatcttgatctataggagcattcgagttggatccctaactaaaatagtgtttgaacaaatat----atttaccttcccacca |
36635560 |
T |
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| Q |
201 |
aactag---attactatgataatttctactcggaacttgagcgttaagtgataacacgcaataatcttaattcatatgtcacgttgtaata |
288 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36635559 |
aactagaatattactatgataatttctactcggaacttgagcgttaagtgataacacacaataatcttaattcatatgtcacgttgtaata |
36635469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 284 - 398
Target Start/End: Complemental strand, 36635441 - 36635326
Alignment:
| Q |
284 |
taatatattacatggaatatgaaacataaaagtaaaataaatattgca-atgatatataaagagattaagaagcatacataaattcatgctgtaggagac |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36635441 |
taatatattacatggaatatgaaacataaaagtaaaataaatattgcatatgatatataaagagattaagaagcatacataaattcatgctgtaggagac |
36635342 |
T |
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| Q |
383 |
agaatgactaataaat |
398 |
Q |
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|||||||||||||||| |
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| T |
36635341 |
agaatgactaataaat |
36635326 |
T |
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